Rh4CG438200
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
N/A
Physical Location & Seq
Forward (+)
67605702 .. 67606843
1142 bp
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UTR
Exon/CDS
Intron
Rh4CG438200.1

Sequence Viewer

Length: 351 bp
ATGTTGATAACTGTTCTGCAGATATCCGATTTTGGGCTTGCCAAGTTGATGCCAGAGGGAAAGGAAATGTATGTGACTGCTAGAGTACTTGGCACATTCGGCTATTTTGATCCGGAGTATACATCGGGTGGAGACTGGAGACTGTACAGACATAATGGAGATCCTTTACTTCATCTAATAAAAGAGTTCTTGAATCTTCAAAACTTGTGGACCTATGATCCTAAAAACAAGACTCCAGAAGAGCATTTGATAAGGATTCAGAAGAACTATAATGCAGTGAATTATCAGACAGTAAATAAGATCACACTGAACTTGGTTTTCTTGTACAAGATCAAGAGATCTAGTAAGTAA

Protein Analysis

116

Amino Acids

13.64

Weight (kDa)

9.3

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 119
AccIII TCCGGA 1 cut(s) 112
AclWI GGATC 3 cut(s) 104, 155, 212
AfaI GTAC 3 cut(s) 87, 146, 326
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 2 cut(s) 193, 200
Alw26I GTCTC 2 cut(s) 126, 133
AlwI GGATC 3 cut(s) 104, 155, 212
Aor13HI TCCGGA 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 210
AvaII GGWCC 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 126, 133
BfaI CTAG 2 cut(s) 81, 342
BfmI CTRYAG 1 cut(s) 17
BglII AGATCT 1 cut(s) 338
BmcAI AGTACT 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmsI GCATC 1 cut(s) 39
BpmI CTGGAG 2 cut(s) 157, 219
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 140
BseAI TCCGGA 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 140
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 2 cut(s) 126, 133
Bsp13I TCCGGA 1 cut(s) 112
Bsp1407I TGTACA 2 cut(s) 144, 324
Bsp143I GATC 6 cut(s) 109, 160, 217, 300, 330, 338
BspEI TCCGGA 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 21
BspPI GGATC 3 cut(s) 104, 155, 212
BspQI GCTCTTC 1 cut(s) 234
BsrGI TGTACA 2 cut(s) 144, 324
BsrI ACTGG 1 cut(s) 140
BssMI GATC 6 cut(s) 109, 160, 217, 300, 330, 338
BssNAI GTATAC 1 cut(s) 120
Bst1107I GTATAC 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 13, 144, 292
Bst6I CTCTTC 1 cut(s) 234
BstAUI TGTACA 2 cut(s) 144, 324
BstC8I GCNNGC 1 cut(s) 39
BstKTI GATC 6 cut(s) 112, 163, 220, 303, 333, 341
BstMAI GTCTC 2 cut(s) 126, 133
BstMBI GATC 6 cut(s) 109, 160, 217, 300, 330, 338
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 17
BstX2I RGATCY 2 cut(s) 160, 338
BstYI RGATCY 2 cut(s) 160, 338
BstZ17I GTATAC 1 cut(s) 120
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 282, 305
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 3 cut(s) 86, 145, 325
CspCI CAANNNNNGTGG 2 cut(s) 188, 223
CviJI RGCY 2 cut(s) 37, 102
CviKI_1 RGCY 2 cut(s) 37, 102
CviQI GTAC 3 cut(s) 86, 145, 325
DpnI GATC 6 cut(s) 111, 162, 219, 302, 332, 340
DpnII GATC 6 cut(s) 109, 160, 217, 300, 330, 338
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco32I GATATC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 210
EcoRV GATATC 1 cut(s) 24
FaiI YATR 5 cut(s) 72, 120, 153, 216, 270
FblI GTMKAC 1 cut(s) 119
FspBI CTAG 2 cut(s) 81, 342
GsuI CTGGAG 2 cut(s) 157, 219
HapII CCGG 1 cut(s) 113
HinfI GANTC 3 cut(s) 193, 232, 256
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 120, 210
Hpy188I TCNGA 3 cut(s) 28, 261, 288
Hpy188III TCNNGA 4 cut(s) 113, 190, 236, 334
Hpy8I GTNNAC 2 cut(s) 120, 210
HpyCH4III ACNGT 3 cut(s) 13, 144, 292
HpyCH4V TGCA 2 cut(s) 19, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
Kpn2I TCCGGA 1 cut(s) 112
Kzo9I GATC 6 cut(s) 109, 160, 217, 300, 330, 338
LguI GCTCTTC 1 cut(s) 234
LpnPI CCDG 4 cut(s) 66, 121, 126, 249
LweI GCATC 1 cut(s) 39
MaeI CTAG 2 cut(s) 81, 342
MaeIII GTNAC 1 cut(s) 73
MalI GATC 6 cut(s) 111, 162, 219, 302, 332, 340
MboI GATC 6 cut(s) 109, 160, 217, 300, 330, 338
MboII GAAGA 3 cut(s) 188, 251, 274
MflI RGATCY 2 cut(s) 160, 338
MluCI AATT 1 cut(s) 280
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 1 cut(s) 49
MroI TCCGGA 1 cut(s) 112
MspI CCGG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 6 cut(s) 109, 160, 217, 300, 330, 338
NmuCI GTSAC 1 cut(s) 73
PciSI GCTCTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 193, 256
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 210
PstI CTGCAG 1 cut(s) 21
PsuI RGATCY 2 cut(s) 160, 338
RsaI GTAC 3 cut(s) 87, 146, 326
RsaNI GTAC 3 cut(s) 86, 145, 325
SapI GCTCTTC 1 cut(s) 234
Sau3AI GATC 6 cut(s) 109, 160, 217, 300, 330, 338
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 87
SchI GAGTC 1 cut(s) 226
SetI ASST 1 cut(s) 215
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 17
SinI GGWCC 1 cut(s) 210
Sse9I AATT 1 cut(s) 280
SspMI CTAG 2 cut(s) 81, 342
TaaI ACNGT 3 cut(s) 13, 144, 292
TasI AATT 1 cut(s) 280
TatI WGTACW 3 cut(s) 85, 144, 324
TfiI GAWTC 2 cut(s) 193, 256
TscAI CASTG 2 cut(s) 282, 312
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 161
TspRI CASTG 2 cut(s) 282, 312
VpaK11BI GGWCC 1 cut(s) 210
XmiI GTMKAC 1 cut(s) 119
XspI CTAG 2 cut(s) 81, 342
ZrmI AGTACT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.