Rh4DG182300

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
N/A
Physical Location & Seq
Reverse (-)
36206994 .. 36217872
10879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG182300.1

Sequence Viewer

Length: 1083 bp
ATGTGCTATAACACCGATACCAGCAGCACTGCCGAAGGGAGTGATTGGGGCCAGGCCATATCATCTTCTCTTCCACATTTGAGGGTGCTAGACTTGTCCAATTGTGGTCTTTCAGGCCCTATCCATGAGTCCCTTGCTAAGCTTCAGTCTCTATCAGTGGTTCAATTGCAAGGGAATGACATCTCTGCACCAATTCCAGGATTCTTTGCTCACTTTTCAAATTTGACTTTCTTGGGTCTCAGCAAATGCTTGTTGCAGGGAATATTTCCAAAAGAGATCTTTCACTTACCTTCTCTGCAAAGCATCGACCTCTCAGAGAATCCAGAACTCCATGGGTCCTTGCCAGAATTTCCAAAAAATGGATCTCTCCGGTCCTTGTTTCTTGGTGGATCAAAATTTTCAGGGTCATTACCAAACTCGATTGGCAACCTCGCAATGTTGTCCACAGTAGATATCTCACTGTGCAATTTCACCGGACCATTACCCAAGTCGATGGCAAACCTTACGCAATTGGTTAGTCTGGACATGTCTGAAAATAACTTTGAAGGTTCAATTCCATCTTTCAGTAGGGCCAAGAATCTGAAGAGCATAGTCCTTTCTTCTAATGGTCTAACTGGTAATATCAATTGCACCACTTGGGGAAACCTTTCTAACTTATTCTTTCTCAGCTTCAGTGACAATATGCTCGACGGTAATGTCCCTTCCTCTTTATTTTCTCTCACCTCGCTGAATTTTTTGCTTCTTCGCTACAATCAATTCTCAGGTCAATTGCCTGAACTATCTAATGACTCTTCCTACTCCATGCGAATTCTTCATTTGAGAAGCAACAATCTGGAAGGTCCAATACCCATATCCATCTTTAATTTTCGACGGCTTACGAGTCTCCATCTTTCTTCAAACAATTTCAGCGGCTCATTTCCTCTTGATGGTTTTCAACATCAAAAAAACCTCCAAATACTTGATCTTTCGTACAACAACATTTTTCTTAGCTACGATGCTAGAAATTTCTCACATCCATCCTTCCCTCAATTCTTGATCATTTTGAGGTTCACAATAACCATTAAAGATTCTCGTTGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

360

Amino Acids

39.59

Weight (kDa)

6.29

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 50 - 108 1.5e-07 Leucine rich repeat
LRR_14 PF23598 122 - 196 1.9e-06 Leucine-rich repeat region
LRR_8 PF13855 268 - 327 5.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 695
AccB7I CCANNNNNTGG 1 cut(s) 359
AciI CCGC 1 cut(s) 909
AclWI GGATC 2 cut(s) 370, 397
AcsI RAATTY 6 cut(s) 220, 347, 395, 730, 807, 1003
AcuI CTGAAG 3 cut(s) 128, 602, 655
AfaI GTAC 1 cut(s) 971
AfiI CCNNNNNNNGG 3 cut(s) 197, 359, 926
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 6 cut(s) 164, 219, 545, 552, 897, 935
AjnI CCWGG 2 cut(s) 51, 196
AluBI AGCT 3 cut(s) 142, 669, 990
AluI AGCT 3 cut(s) 142, 669, 990
Alw26I GTCTC 3 cut(s) 153, 242, 887
AlwI GGATC 2 cut(s) 370, 397
AoxI GGCC 4 cut(s) 49, 54, 115, 570
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 6 cut(s) 220, 347, 395, 730, 807, 1003
Asp700I GAANNNNTTC 1 cut(s) 646
AspS9I GGNCC 7 cut(s) 49, 116, 336, 372, 476, 570, 839
AsuHPI GGTGA 2 cut(s) 463, 712
AvaII GGWCC 4 cut(s) 336, 372, 476, 839
BarI GAAGNNNNNNTAC 4 cut(s) 685, 717, 828, 860
BbvI GCAGC 1 cut(s) 36
BccI CCATC 6 cut(s) 487, 565, 863, 894, 920, 1024
BceAI ACGGC 1 cut(s) 887
BciT130I CCWGG 2 cut(s) 53, 198
BclI TGATCA 1 cut(s) 1035
BcoDI GTCTC 3 cut(s) 153, 242, 887
BfaI CTAG 2 cut(s) 89, 999
BglII AGATCT 1 cut(s) 276
BisI GCNGC 2 cut(s) 25, 910
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 2 cut(s) 26, 911
Bme1390I CCNGG 2 cut(s) 53, 198
Bme18I GGWCC 4 cut(s) 336, 372, 476, 839
BmgT120I GGNCC 7 cut(s) 49, 116, 336, 372, 476, 570, 839
BmiI GGNNCC 2 cut(s) 50, 337
BmrFI CCNGG 2 cut(s) 53, 198
BmsI GCATC 2 cut(s) 312, 985
Bpu1102I GCTNAGC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 331
BsaWI WCCGGW 2 cut(s) 369, 473
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 359, 926
Bse1I ACTGG 1 cut(s) 619
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 2 cut(s) 53, 198
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 2 cut(s) 1012, 1016
BseLI CCNNNNNNNGG 3 cut(s) 197, 359, 926
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 4 cut(s) 253, 327, 679, 774
BseNI ACTGG 1 cut(s) 619
BseXI GCAGC 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 4 cut(s) 51, 56, 117, 572
BsiSI CCGG 2 cut(s) 370, 474
BslFI GGGAC 2 cut(s) 115, 683
BslI CCNNNNNNNGG 3 cut(s) 197, 359, 926
BsmAI GTCTC 3 cut(s) 153, 242, 887
BsmFI GGGAC 2 cut(s) 115, 683
BsnI GGCC 4 cut(s) 51, 56, 117, 572
Bso31I GGTCTC 1 cut(s) 242
Bsp143I GATC 5 cut(s) 276, 362, 389, 961, 1035
Bsp1720I GCTNAGC 1 cut(s) 138
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 1 cut(s) 909
BspANI GGCC 4 cut(s) 51, 56, 117, 572
BspCNI CTCAG 4 cut(s) 252, 326, 678, 773
BspLI GGNNCC 2 cut(s) 50, 337
BspPI GGATC 2 cut(s) 370, 397
BspQI GCTCTTC 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 441
BsrI ACTGG 1 cut(s) 619
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 5 cut(s) 276, 362, 389, 961, 1035
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 53, 198
Bst4CI ACNGT 3 cut(s) 448, 462, 692
Bst6I CTCTTC 3 cut(s) 75, 578, 796
BstDEI CTNAG 6 cut(s) 138, 239, 313, 665, 760, 986
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 2 cut(s) 1012, 1016
BstKTI GATC 5 cut(s) 279, 365, 392, 964, 1038
BstMAI GTCTC 3 cut(s) 153, 242, 887
BstMBI GATC 5 cut(s) 276, 362, 389, 961, 1035
BstNI CCWGG 2 cut(s) 53, 198
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 2 cut(s) 51, 196
BstV1I GCAGC 1 cut(s) 36
BstX2I RGATCY 2 cut(s) 276, 362
BstXI CCANNNNNNTGG 1 cut(s) 493
BstYI RGATCY 2 cut(s) 276, 362
BsuRI GGCC 4 cut(s) 51, 56, 117, 572
BtgI CCRYGG 1 cut(s) 331
BtsCI GGATG 2 cut(s) 1012, 1016
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 4 cut(s) 27, 162, 458, 679
Cfr13I GGNCC 7 cut(s) 49, 116, 336, 372, 476, 570, 839
Csp6I GTAC 1 cut(s) 970
CviAII CATG 4 cut(s) 125, 332, 526, 802
CviQI GTAC 1 cut(s) 970
DdeI CTNAG 6 cut(s) 138, 239, 313, 665, 760, 986
DpnI GATC 5 cut(s) 278, 364, 391, 963, 1037
DpnII GATC 5 cut(s) 276, 362, 389, 961, 1035
DrdI GACNNNNNNGTC 1 cut(s) 695
DseDI GACNNNNNNGTC 1 cut(s) 695
Eam1104I CTCTTC 3 cut(s) 75, 578, 796
EarI CTCTTC 3 cut(s) 75, 578, 796
Eco130I CCWWGG 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 454
Eco47I GGWCC 4 cut(s) 336, 372, 476, 839
Eco57I CTGAAG 3 cut(s) 128, 602, 655
EcoO109I RGGNCCY 2 cut(s) 116, 336
EcoRI GAATTC 1 cut(s) 807
EcoRII CCWGG 2 cut(s) 51, 196
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 4 cut(s) 128, 335, 529, 805
FaiI YATR 9 cut(s) 9, 59, 126, 333, 527, 590, 683, 803, 851
FaqI GGGAC 2 cut(s) 115, 683
FatI CATG 4 cut(s) 124, 331, 525, 801
FbaI TGATCA 1 cut(s) 1035
Fnu4HI GCNGC 2 cut(s) 25, 910
FokI GGATG 2 cut(s) 999, 1003
Fsp4HI GCNGC 2 cut(s) 25, 910
FspBI CTAG 2 cut(s) 89, 999
GluI GCNGC 2 cut(s) 25, 910
HaeIII GGCC 4 cut(s) 51, 56, 117, 572
HapII CCGG 2 cut(s) 370, 474
Hin1II CATG 4 cut(s) 128, 335, 529, 805
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 7 cut(s) 128, 201, 319, 577, 788, 880, 1067
HpaII CCGG 2 cut(s) 370, 474
HphI GGTGA 2 cut(s) 463, 712
Hpy166II GTNNAC 2 cut(s) 444, 1050
Hpy188I TCNGA 3 cut(s) 316, 532, 582
Hpy188III TCNNGA 5 cut(s) 323, 521, 833, 923, 1033
Hpy8I GTNNAC 2 cut(s) 444, 1050
Hpy99I CGWCG 2 cut(s) 692, 873
HpyAV CCTTC 6 cut(s) 29, 300, 539, 711, 830, 1030
HpyCH4III ACNGT 3 cut(s) 448, 462, 692
HpyCH4V TGCA 6 cut(s) 169, 188, 256, 298, 465, 630
HpyF3I CTNAG 6 cut(s) 138, 239, 313, 665, 760, 986
Hsp92II CATG 4 cut(s) 128, 335, 529, 805
Ksp22I TGATCA 1 cut(s) 1035
Kzo9I GATC 5 cut(s) 276, 362, 389, 961, 1035
LguI GCTCTTC 1 cut(s) 578
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 2 cut(s) 312, 985
MaeI CTAG 2 cut(s) 89, 999
MaeIII GTNAC 1 cut(s) 674
MalI GATC 5 cut(s) 278, 364, 391, 963, 1037
MboI GATC 5 cut(s) 276, 362, 389, 961, 1035
MboII GAAGA 8 cut(s) 57, 62, 591, 595, 734, 783, 803, 885
MfeI CAATTG 5 cut(s) 100, 164, 509, 625, 767
MflI RGATCY 2 cut(s) 276, 362
MlyI GAGTC 3 cut(s) 137, 782, 889
MnlI CCTC 9 cut(s) 75, 320, 440, 715, 733, 930, 959, 1035, 1038
MroXI GAANNNNTTC 1 cut(s) 646
MseI TTAA 3 cut(s) 861, 1062, 1081
MspA1I CMGCKG 1 cut(s) 909
MspI CCGG 2 cut(s) 370, 474
MspR9I CCNGG 2 cut(s) 53, 198
MunI CAATTG 5 cut(s) 100, 164, 509, 625, 767
MvaI CCWGG 2 cut(s) 53, 198
NcoI CCATGG 1 cut(s) 331
NdeII GATC 5 cut(s) 276, 362, 389, 961, 1035
NlaIII CATG 4 cut(s) 128, 335, 529, 805
NlaIV GGNNCC 2 cut(s) 50, 337
NmuCI GTSAC 1 cut(s) 674
NspI RCATGY 1 cut(s) 529
PciI ACATGT 1 cut(s) 525
PciSI GCTCTTC 1 cut(s) 578
PdmI GAANNNNTTC 1 cut(s) 646
PfeI GAWTC 4 cut(s) 201, 319, 577, 1067
PflMI CCANNNNNTGG 1 cut(s) 359
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 2 cut(s) 26, 911
PleI GAGTC 3 cut(s) 136, 782, 888
PpsI GAGTC 3 cut(s) 136, 782, 888
PpuMI RGGWCCY 1 cut(s) 336
PscI ACATGT 1 cut(s) 525
Psp5II RGGWCCY 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 51, 196
PspGI CCWGG 2 cut(s) 51, 196
PspN4I GGNNCC 2 cut(s) 50, 337
PspPI GGNCC 7 cut(s) 49, 116, 336, 372, 476, 570, 839
PspPPI RGGWCCY 1 cut(s) 336
PsuI RGATCY 2 cut(s) 276, 362
RsaI GTAC 1 cut(s) 971
RsaNI GTAC 1 cut(s) 970
SapI GCTCTTC 1 cut(s) 578
SaqAI TTAA 3 cut(s) 861, 1062, 1081
SatI GCNGC 2 cut(s) 25, 910
Sau3AI GATC 5 cut(s) 276, 362, 389, 961, 1035
Sau96I GGNCC 7 cut(s) 49, 116, 336, 372, 476, 570, 839
SchI GAGTC 3 cut(s) 137, 782, 889
ScrFI CCNGG 2 cut(s) 53, 198
SfaNI GCATC 2 cut(s) 312, 985
SinI GGWCC 4 cut(s) 336, 372, 476, 839
SsiI CCGC 1 cut(s) 909
SspI AATATT 1 cut(s) 264
SspMI CTAG 2 cut(s) 89, 999
StyD4I CCNGG 2 cut(s) 51, 196
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 3 cut(s) 448, 462, 692
TaqI TCGA 5 cut(s) 306, 419, 491, 687, 868
TauI GCSGC 1 cut(s) 912
TfiI GAWTC 4 cut(s) 201, 319, 577, 1067
Tru1I TTAA 3 cut(s) 861, 1062, 1081
Tru9I TTAA 3 cut(s) 861, 1062, 1081
TscAI CASTG 4 cut(s) 34, 162, 465, 679
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 1 cut(s) 803
TspRI CASTG 4 cut(s) 34, 162, 465, 679
Van91I CCANNNNNTGG 1 cut(s) 359
VpaK11BI GGWCC 4 cut(s) 336, 372, 476, 839
XapI RAATTY 6 cut(s) 220, 347, 395, 730, 807, 1003
XceI RCATGY 1 cut(s) 529
XmnI GAANNNNTTC 1 cut(s) 646
XspI CTAG 2 cut(s) 89, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.