Rh4DG183200

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
N/A
Physical Location & Seq
Reverse (-)
36302029 .. 36304640
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG183200.1

Sequence Viewer

Length: 384 bp
ATGGCAGATGAATTTCTGATTACTTTTGCTGCTGAGGGTGTGCTGAAGAAGGTGTCCTCACTTGTCAATGAGCAAATCAGTCTTGCATGGGGGTTCAAAGGAGATCTGAAGAAGCTAGGCGAGTCGTTATCACTAATCCAGAACATACCAGAAAAGGCTGGAATTAAAAATCGGGATGCATTGCTTAAATCTCTCCAAGATGATCTAACAGAGAAGAGATATATTCTTATCCTAGATGATGTTTGGAATGAGGATGGTATAAAATGGGAAAGTTTGATGAGTTGTTTGTCAAAGCTTAATTCTGCTCCGGGAAGCAACATCATCATCACTACCCGCAGTGCCAAGGTGGCATCAATTTCGGAAGCACTTACTCGAGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

127

Amino Acids

13.99

Weight (kDa)

5.84

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 42 - 122 7.9e-12 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 2 cut(s) 65, 128
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 3 cut(s) 115, 295, 377
AluI AGCT 3 cut(s) 115, 295, 377
Alw21I GWGCWC 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 309
AvaI CYCGRG 1 cut(s) 372
BanII GRGCYC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 379
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 248
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BcnI CCSGG 1 cut(s) 309
BfaI CTAG 2 cut(s) 116, 233
BglI GCCNNNNNGGC 1 cut(s) 347
BglII AGATCT 1 cut(s) 103
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 166, 359
Bpu10I CCTNAGC 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 2 cut(s) 181, 259
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 2 cut(s) 103, 202
BspACI CCGC 1 cut(s) 334
BspCNI CTCAG 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 2 cut(s) 103, 202
BssT1I CCWWGG 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 181, 259
BstKTI GATC 2 cut(s) 106, 205
BstMBI GATC 2 cut(s) 103, 202
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtsCI GGATG 2 cut(s) 181, 259
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 343
CviAII CATG 1 cut(s) 87
CviJI RGCY 4 cut(s) 115, 158, 295, 377
CviKI_1 RGCY 4 cut(s) 115, 158, 295, 377
DdeI CTNAG 1 cut(s) 33
DpnI GATC 2 cut(s) 105, 204
DpnII GATC 2 cut(s) 103, 202
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Ecl136II GAGCTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 377
Eco57I CTGAAG 2 cut(s) 65, 128
Eco88I CYCGRG 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 342
EcoT22I ATGCAT 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 1 cut(s) 90
FaiI YATR 4 cut(s) 88, 146, 222, 260
FatI CATG 1 cut(s) 86
FauI CCCGC 1 cut(s) 341
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 188, 266
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 2 cut(s) 116, 233
GluI GCNGC 1 cut(s) 30
HapII CCGG 1 cut(s) 308
Hin1II CATG 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 1 cut(s) 122
HpaII CCGG 1 cut(s) 308
Hpy188I TCNGA 3 cut(s) 18, 108, 361
Hpy188III TCNNGA 2 cut(s) 139, 173
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 86, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 1 cut(s) 90
Kzo9I GATC 2 cut(s) 103, 202
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 4 cut(s) 144, 152, 162, 321
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 166, 359
MaeI CTAG 2 cut(s) 116, 233
MalI GATC 2 cut(s) 105, 204
MboI GATC 2 cut(s) 103, 202
MboII GAAGA 3 cut(s) 58, 121, 226
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 4 cut(s) 11, 162, 298, 354
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 3 cut(s) 28, 67, 244
Mph1103I ATGCAT 1 cut(s) 181
MseI TTAA 3 cut(s) 165, 186, 297
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 347
NciI CCSGG 1 cut(s) 309
NdeII GATC 2 cut(s) 103, 202
NlaIII CATG 1 cut(s) 90
NsiI ATGCAT 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 372
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 379
PspXI VCTCGAGB 1 cut(s) 372
PsuI RGATCY 1 cut(s) 103
SacI GAGCTC 1 cut(s) 379
SaqAI TTAA 3 cut(s) 165, 186, 297
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 103, 202
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 379
SetI ASST 5 cut(s) 54, 117, 297, 348, 379
SfaNI GCATC 2 cut(s) 166, 359
Sfr274I CTCGAG 1 cut(s) 372
SlaI CTCGAG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 4 cut(s) 11, 162, 298, 354
SsiI CCGC 1 cut(s) 334
SspMI CTAG 2 cut(s) 116, 233
SstI GAGCTC 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 342
TaqI TCGA 1 cut(s) 373
TasI AATT 4 cut(s) 11, 162, 298, 354
Tru1I TTAA 3 cut(s) 165, 186, 297
Tru9I TTAA 3 cut(s) 165, 186, 297
TscAI CASTG 1 cut(s) 343
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 24
TspRI CASTG 1 cut(s) 343
XapI RAATTY 1 cut(s) 11
XhoI CTCGAG 1 cut(s) 372
XspI CTAG 2 cut(s) 116, 233
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.