Rh4DG296800

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
N/A
Physical Location & Seq
Forward (+)
51871888 .. 51872556
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG296800.1

Sequence Viewer

Length: 669 bp
ATGGGGAGTTTTGATCCTTATTCTATGTTTTCAACTACTTTCCCTGGAACGAAAATTCCTGAGTGGTTCGGTACAGAGAAATATCTACCCTCGAGTAAGTTGATGTTCCCACTTCCTCCAAATTTGGAAAATAATGAGGATTGGATGGGAATTGTTGCGTGCGTTAGTTTTTCAGTGCACGCGTCTCCAGCTGATGTTCAGAGTTATTTGGATTCAGATGTTCATCCTAAGCTTACATGCCATTTCCAATGTTGTGAAGAACATGATAACTTGTTTCTCTTTGATGCCCAGTTGAGTGGCAGTGCTCCCGAGAATAAATTCATGTGGTTGTATCTTAGAGGATTCATTTGGCTTCACTACATACCGCGCGTGTTTATGACGAGTAACTTGAATTTAGAACATCGACTGTTGGCTTCATTTACGAGTGATTCCTCTCAAGTCTTGGGGGTACATAGATGTGGCTTGCGTATCTTATACAAACAAGACATGCAAGAACTGAAGCAAACAATAATATCCTGCTTCACCTCCTTTTTTGACAAGGAGGATCTCATTCGCCAATATTTCAATGATGTTTTCCAAGACCATCATAGAAACACATCACCCAATGGAAATCGCAAAGACATACTCTTGGATCAGAATCAGCTCCTGGTAAAGAACAAAAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

222

Amino Acids

25.86

Weight (kDa)

5.96

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 14 - 163 6.6e-08 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 182, 367, 369
AciI CCGC 1 cut(s) 365
AclWI GGATC 3 cut(s) 8, 552, 639
AcsI RAATTY 4 cut(s) 54, 121, 317, 391
AcuI CTGAAG 1 cut(s) 518
AfaI GTAC 2 cut(s) 73, 450
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 3 cut(s) 33, 391, 565
AjnI CCWGG 2 cut(s) 43, 645
AloI GAACNNNNNNTCC 2 cut(s) 40, 72
AluBI AGCT 3 cut(s) 191, 232, 643
AluI AGCT 3 cut(s) 191, 232, 643
Alw21I GWGCWC 2 cut(s) 180, 307
Alw26I GTCTC 1 cut(s) 189
Alw44I GTGCAC 1 cut(s) 176
AlwI GGATC 3 cut(s) 8, 552, 639
AlwNI CAGNNNCTG 1 cut(s) 646
Ama87I CYCGRG 2 cut(s) 91, 308
ApaLI GTGCAC 1 cut(s) 176
ApoI RAATTY 4 cut(s) 54, 121, 317, 391
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 514, 591
AvaI CYCGRG 2 cut(s) 91, 308
BaeGI GKGCMC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 180, 307
BccI CCATC 2 cut(s) 139, 591
BciT130I CCWGG 2 cut(s) 45, 647
BcoDI GTCTC 1 cut(s) 189
Bme1390I CCNGG 2 cut(s) 45, 647
BmeT110I CYCGRG 2 cut(s) 91, 308
BmrFI CCNGG 2 cut(s) 45, 647
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 420
BsaBI GATNNNNATC 2 cut(s) 222, 636
BsaJI CCNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 289
Bse8I GATNNNNATC 2 cut(s) 222, 636
BseBI CCWGG 2 cut(s) 45, 647
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 150, 223
BseJI GATNNNNATC 2 cut(s) 222, 636
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 289
BseSI GKGCMC 1 cut(s) 180
Bsh1236I CGCG 3 cut(s) 182, 367, 369
BsiHKAI GWGCWC 2 cut(s) 180, 307
BsiHKCI CYCGRG 2 cut(s) 91, 308
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
BsoBI CYCGRG 2 cut(s) 91, 308
Bsp1286I GDGCHC 2 cut(s) 180, 307
Bsp143I GATC 3 cut(s) 13, 544, 631
BspACI CCGC 1 cut(s) 365
BspCNI CTCAG 1 cut(s) 52
BspFNI CGCG 3 cut(s) 182, 367, 369
BspPI GGATC 3 cut(s) 8, 552, 639
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 3 cut(s) 13, 544, 631
Bst2UI CCWGG 2 cut(s) 45, 647
Bst4CI ACNGT 1 cut(s) 408
BstC8I GCNNGC 3 cut(s) 160, 180, 464
BstDEI CTNAG 3 cut(s) 60, 228, 335
BstF5I GGATG 2 cut(s) 150, 223
BstFNI CGCG 3 cut(s) 182, 367, 369
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 3 cut(s) 16, 547, 634
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 3 cut(s) 13, 544, 631
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 2 cut(s) 45, 647
BstNSI RCATGY 2 cut(s) 240, 490
BstSCI CCNGG 2 cut(s) 43, 645
BstSLI GKGCMC 1 cut(s) 180
BstUI CGCG 3 cut(s) 182, 367, 369
BstX2I RGATCY 1 cut(s) 544
BstXI CCANNNNNNTGG 1 cut(s) 296
BstYI RGATCY 1 cut(s) 544
BtsCI GGATG 2 cut(s) 150, 223
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 180, 307
Cac8I GCNNGC 3 cut(s) 160, 180, 464
CaiI CAGNNNCTG 1 cut(s) 646
CfoI GCGC 1 cut(s) 369
CseI GACGC 1 cut(s) 171
Csp6I GTAC 2 cut(s) 72, 449
CviAII CATG 4 cut(s) 237, 263, 322, 487
CviJI RGCY 6 cut(s) 191, 232, 352, 413, 462, 643
CviKI_1 RGCY 6 cut(s) 191, 232, 352, 413, 462, 643
CviQI GTAC 2 cut(s) 72, 449
DdeI CTNAG 3 cut(s) 60, 228, 335
DpnI GATC 3 cut(s) 15, 546, 633
DpnII GATC 3 cut(s) 13, 544, 631
Eco57I CTGAAG 1 cut(s) 518
Eco88I CYCGRG 2 cut(s) 91, 308
EcoRII CCWGG 2 cut(s) 43, 645
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 4 cut(s) 240, 266, 325, 490
FatI CATG 4 cut(s) 236, 262, 321, 486
FokI GGATG 2 cut(s) 157, 210
GlaI GCGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 171
HgaI GACGC 1 cut(s) 171
HhaI GCGC 1 cut(s) 369
Hin1II CATG 4 cut(s) 240, 266, 325, 490
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 4 cut(s) 212, 342, 428, 637
HphI GGTGA 2 cut(s) 514, 591
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 201, 217, 636
Hpy188III TCNNGA 2 cut(s) 59, 308
Hpy8I GTNNAC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4V TGCA 2 cut(s) 178, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 3 cut(s) 60, 228, 335
Hsp92II CATG 4 cut(s) 240, 266, 325, 490
HspAI GCGC 1 cut(s) 367
Kzo9I GATC 3 cut(s) 13, 544, 631
LmnI GCTCC 2 cut(s) 310, 648
LpnPI CCDG 8 cut(s) 30, 57, 72, 201, 302, 529, 632, 659
LweI GCATC 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 383
MalI GATC 3 cut(s) 15, 546, 633
MboI GATC 3 cut(s) 13, 544, 631
MboII GAAGA 1 cut(s) 269
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 2 cut(s) 180, 307
MluCI AATT 6 cut(s) 54, 121, 150, 317, 391, 664
MluI ACGCGT 1 cut(s) 180
MnlI CCTC 7 cut(s) 100, 126, 130, 332, 442, 535, 535
MroXI GAANNNNTTC 1 cut(s) 317
MslI CAYNNNNRTG 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 45, 647
MvaI CCWGG 2 cut(s) 45, 647
MvnI CGCG 3 cut(s) 182, 367, 369
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 3 cut(s) 13, 544, 631
NlaIII CATG 4 cut(s) 240, 266, 325, 490
NspI RCATGY 2 cut(s) 240, 490
PaeR7I CTCGAG 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 4 cut(s) 212, 342, 428, 637
Psp6I CCWGG 2 cut(s) 43, 645
PspGI CCWGG 2 cut(s) 43, 645
PspXI VCTCGAGB 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 646
PsuI RGATCY 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 73, 450
RsaNI GTAC 2 cut(s) 72, 449
RseI CAYNNNNRTG 1 cut(s) 456
Sau3AI GATC 3 cut(s) 13, 544, 631
ScrFI CCNGG 2 cut(s) 45, 647
SduI GDGCHC 2 cut(s) 180, 307
SetI ASST 4 cut(s) 193, 234, 527, 645
SfaNI GCATC 1 cut(s) 274
Sfr274I CTCGAG 1 cut(s) 91
SlaI CTCGAG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 2 cut(s) 91, 435
SmoI CTYRAG 2 cut(s) 91, 435
Sse9I AATT 6 cut(s) 54, 121, 150, 317, 391, 664
SsiI CCGC 1 cut(s) 365
SspI AATATT 1 cut(s) 560
StyD4I CCNGG 2 cut(s) 43, 645
TaaI ACNGT 1 cut(s) 408
TaqI TCGA 2 cut(s) 92, 403
TasI AATT 6 cut(s) 54, 121, 150, 317, 391, 664
TfiI GAWTC 4 cut(s) 212, 342, 428, 637
TscAI CASTG 2 cut(s) 180, 307
TspDTI ATGAA 4 cut(s) 212, 310, 334, 405
TspRI CASTG 2 cut(s) 180, 307
VneI GTGCAC 1 cut(s) 176
XapI RAATTY 4 cut(s) 54, 121, 317, 391
XceI RCATGY 2 cut(s) 240, 490
XhoI CTCGAG 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.