Rh4DG312900

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
N/A
Physical Location & Seq
Forward (+)
53549777 .. 53550076
300 bp
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UTR
Exon/CDS
Intron
Rh4DG312900.1

Sequence Viewer

Length: 300 bp
ATGAAAGACGGAAAAGAGGTGGCAGTTAAAATGATGGCGGATTCCTCTGCCCACATGAATAAGCAATTTGTGACTGAGATAGCTCTCTTATCAAGGATTCATCATAGGAACTTGGTTCCTTTAATTGGATACTGTGAAGAAGAACATCAATGCATTCTGGTTTATGAGTATATGCACAATGGGACATTACGGGATCACTTACATGGTCTGCTCTCTCATCTAATACAAGTTAAAATCTGTTCTTTGAGTAAATATTCTCTTGTGTTTTTTGGAAGCAGTCTGATCAACTCCATGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

99

Amino Acids

11.3

Weight (kDa)

7.09

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 68 3.6e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 3 - 72 1.1e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 125
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AlwI GGATC 1 cut(s) 201
BccI CCATC 1 cut(s) 28
BciVI GTATCC 1 cut(s) 122
BclI TGATCA 1 cut(s) 282
BfuI GTATCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 193, 282
BspACI CCGC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 201
BssMI GATC 2 cut(s) 193, 282
Bst4CI ACNGT 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 75
BstKTI GATC 2 cut(s) 196, 285
BstMBI GATC 2 cut(s) 193, 282
BsuI GTATCC 1 cut(s) 122
CviAII CATG 3 cut(s) 55, 203, 292
CviJI RGCY 1 cut(s) 83
CviKI_1 RGCY 1 cut(s) 83
DdeI CTNAG 1 cut(s) 75
DpnI GATC 2 cut(s) 195, 284
DpnII GATC 2 cut(s) 193, 282
EciI GGCGGA 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 155
FaeI CATG 3 cut(s) 58, 206, 295
FaiI YATR 7 cut(s) 56, 105, 165, 171, 173, 204, 293
FaqI GGGAC 1 cut(s) 196
FatI CATG 3 cut(s) 54, 202, 291
FbaI TGATCA 1 cut(s) 282
Hin1II CATG 3 cut(s) 58, 206, 295
HinfI GANTC 2 cut(s) 41, 97
Hpy188I TCNGA 1 cut(s) 282
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 153, 175
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 296
Hsp92II CATG 3 cut(s) 58, 206, 295
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 2 cut(s) 193, 282
LpnPI CCDG 1 cut(s) 143
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 70
MalI GATC 2 cut(s) 195, 284
MboI GATC 2 cut(s) 193, 282
MboII GAAGA 2 cut(s) 149, 152
MluCI AATT 2 cut(s) 65, 123
MnlI CCTC 2 cut(s) 10, 55
Mph1103I ATGCAT 1 cut(s) 155
MseI TTAA 3 cut(s) 27, 122, 231
MslI CAYNNNNRTG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 153
NdeII GATC 2 cut(s) 193, 282
NlaIII CATG 3 cut(s) 58, 206, 295
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 155
PctI GAATGC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 41, 97
PspN4I GGNNCC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 3 cut(s) 27, 122, 231
Sau3AI GATC 2 cut(s) 193, 282
SetI ASST 3 cut(s) 21, 85, 299
SgeI CNNG 8 cut(s) 67, 105, 124, 170, 203, 215, 239, 272
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 2 cut(s) 65, 123
SsiI CCGC 1 cut(s) 38
SspI AATATT 1 cut(s) 254
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 1 cut(s) 299
TasI AATT 2 cut(s) 65, 123
TfiI GAWTC 2 cut(s) 41, 97
Tru1I TTAA 3 cut(s) 27, 122, 231
Tru9I TTAA 3 cut(s) 27, 122, 231
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 17, 71, 89
TspGWI ACGGA 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.