Rh4DG336100

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
N/A
Physical Location & Seq
Forward (+)
55957159 .. 55958709
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG336100.1

Sequence Viewer

Length: 345 bp
ATGGATCAAGAACTTGGTCTGCAAAGCATCATGAATGAGGAGGACAAAGTAAGGGCAAGGAAACTGATAATAGTGAGCTTGTGGTGCATACAAACTGACCCTTCAAACCGGCCAGCGATTAGAGAAGTTATAGAAATGTTGGAAGGGAGTGTTGAGTCCTTGCAGATGCCACCAAAGCCTTATTTGTCTTCTCCTCCAAAATCTCCTGTAGTGATTGGTCCTCTTCGTTGTTGGCCAGGAGGTTTATGCTTTTCTAGGTCGATTGGAGACATGGATGTTGTGGAGTTCATAGTTCCAATACCATATGTGAAACAAGTCAAGGTGTCTGTTGCCTTGCTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

114

Amino Acids

12.69

Weight (kDa)

5.4

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 110, 233
AgsI TTSAA 1 cut(s) 105
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 2 cut(s) 78, 342
AluI AGCT 2 cut(s) 78, 342
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 110, 233
AspS9I GGNCC 1 cut(s) 218
AvaII GGWCC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 207
BlpI GCTNAGC 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 237
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 2 cut(s) 36, 156
BpiI GAAGAC 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 338
Bse118I RCCGGY 1 cut(s) 108
BseBI CCWGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 329
BseRI GAGGAG 2 cut(s) 53, 183
BshFI GGCC 2 cut(s) 112, 235
BsiSI CCGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 261
BsnI GGCC 2 cut(s) 112, 235
Bsp143I GATC 1 cut(s) 4
Bsp1720I GCTNAGC 1 cut(s) 338
BspANI GGCC 2 cut(s) 112, 235
BspCNI CTCAG 1 cut(s) 330
BspHI TCATGA 1 cut(s) 30
BspPI GGATC 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 108
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 237
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 338
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 2 cut(s) 84, 175
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 180
BsuRI GGCC 2 cut(s) 112, 235
BtsCI GGATG 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 114
CciI TCATGA 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 218
CviAII CATG 2 cut(s) 31, 271
CviJI RGCY 5 cut(s) 78, 112, 178, 235, 342
CviKI_1 RGCY 5 cut(s) 78, 112, 178, 235, 342
DdeI CTNAG 1 cut(s) 338
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 2 cut(s) 110, 233
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 2 cut(s) 34, 274
FaiI YATR 8 cut(s) 32, 89, 131, 247, 272, 290, 304, 306
FatI CATG 2 cut(s) 30, 270
FauNDI CATATG 1 cut(s) 304
FokI GGATG 1 cut(s) 287
FspBI CTAG 1 cut(s) 255
HaeIII GGCC 2 cut(s) 112, 235
HapII CCGG 1 cut(s) 109
Hin1II CATG 2 cut(s) 34, 274
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 8, 31
HpyAV CCTTC 2 cut(s) 111, 137
HpyCH4V TGCA 3 cut(s) 22, 87, 163
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 175
HpyF3I CTNAG 1 cut(s) 338
Hsp92II CATG 2 cut(s) 34, 274
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 122, 126, 219, 222, 249
LweI GCATC 2 cut(s) 36, 156
MaeI CTAG 1 cut(s) 255
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 2 cut(s) 180, 215
MlsI TGGCCA 1 cut(s) 235
MluNI TGGCCA 1 cut(s) 235
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 5 cut(s) 31, 34, 204, 231, 233
Mox20I TGGCCA 1 cut(s) 235
MscI TGGCCA 1 cut(s) 235
Msp20I TGGCCA 1 cut(s) 235
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 84, 175
NdeI CATATG 1 cut(s) 304
NdeII GATC 1 cut(s) 4
NlaIII CATG 2 cut(s) 34, 274
PagI TCATGA 1 cut(s) 30
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspPI GGNCC 1 cut(s) 218
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 237
SetI ASST 5 cut(s) 80, 244, 260, 324, 344
SfaNI GCATC 2 cut(s) 36, 156
SfcI CTRYAG 1 cut(s) 207
SinI GGWCC 1 cut(s) 218
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 235
TaqI TCGA 1 cut(s) 260
TspDTI ATGAA 2 cut(s) 47, 277
VpaK11BI GGWCC 1 cut(s) 218
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.