Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

60759528 .. 60763880

Gene Structure 4353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG391500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGACGGCCTGATTCGCTGGTTCCAACGCATCGCAACTTCTACTTCTTCATCCTCCCCCGATCCCCATGTACACGACTACCAGTCTCCGTCGGCGGAGGAGCAGGAGTTGACGATCACGGTGGACCTGGACATGAGTGGCCTGAAGCCGATCAAGGTGCCGATAAGAACCAATCATAGACTCGCCTCCATGGACCATCATAAGTACACTCCTGCTATTGATATTTGGAGCATAGGGTGTATATTTGCAGAAATGCTAACAGGAAAACCATTGTTTCCTGGGAAAAATGTTGTACATCAATTGGATCTCATTACTGATTTACTTGGCACTCCGTCTATCGAATCTATTGCAAGGATTCGGAATGAAAAGGCCAGAAGATATTTAAGTAATATGAAGATAAAGAAACCAACTCCTCTCTCACAAAAAATGCCTCATGCAGATCCATTGGCTCTTCGTTTACTTGAGCGTTTGCTTGCATTTGATCCTAGAGATCGTATTTCTGCTGAAGAGGCACTATCTGACCCATATTTTCATGGATTGGCAAATAAGGATAATGAACCATCCAAGCAGCCCATTTCAAAGCTTGAGTTTGATTTTGAAAAGAGGAAACTAACAAAAGATGATGTAAGAGAGCTAATTTATAGAGAGATTTTAGAGTATCATCCGAAGATGCTGCATGACTACCTTCAAGGTTCAGATAATATTGGCTTCATGTATCCAAGTGGAGTTGATCGATTTAGACGACAATTTGCCCATCTCGAGGAACAGTTTGGTAAAGGTGACAGAAGCACTGCACTGCAGAGGAAGCATGCTTCATTACCTAGAGAACGAGTTTGTATGGATGAGGGCACGGAGCAAAATGGCAATTCTAAAAAGGGTACCACACTCTCAGCGGGTCGTGCAGCTATTCAGAGCCCTCCAAAGTCCCAGAGGTTTGAAGTAACAGAATCTGTCTGTGAAAATGGATCAACCATACAGAATGACCTTAATAAGCCACACTATAGTCCTCATAGTCTGGTGAAGAGTGATAGCATGAGTGCTTCTCAGTGTGTTGTTGTAAATGGAAAGTACCTCGAGAAGGACAGAATCGCAGCACAAAAGAAAGAGATGATTAAAGCGGTGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

375

Amino Acids

42.52

Weight (kDa)

8.67

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	65 - 177	1.4e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	878
AccB1I	GGYRCC	2 cut(s)	157, 878
AciI	CCGC	3 cut(s)	95, 893, 1118
AclWI	GGATC	5 cut(s)	56, 312, 434, 476, 973
AcuI	CTGAAG	2 cut(s)	164, 525
AfaI	GTAC	5 cut(s)	72, 206, 294, 880, 1070
AfiI	CCNNNNNNNGG	2 cut(s)	760, 1078
AgsI	TTSAA	4 cut(s)	579, 599, 689, 938
AhdI	GACNNNNNGTC	1 cut(s)	82
AjnI	CCWGG	2 cut(s)	126, 277
AluBI	AGCT	3 cut(s)	583, 634, 905
AluI	AGCT	3 cut(s)	583, 634, 905
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	5 cut(s)	56, 312, 434, 476, 973
AlwNI	CAGNNNCTG	1 cut(s)	950
Ama87I	CYCGRG	2 cut(s)	758, 1073
AoxI	GGCC	3 cut(s)	7, 139, 369
ApeKI	GCWGC	4 cut(s)	568, 673, 902, 1091
Asp718I	GGTACC	1 cut(s)	878
AspS9I	GGNCC	2 cut(s)	124, 193
AsuHPI	GGTGA	2 cut(s)	791, 1030
AvaI	CYCGRG	2 cut(s)	758, 1073
AvaII	GGWCC	2 cut(s)	124, 193
BaeGI	GKGCMC	1 cut(s)	851
BanI	GGYRCC	2 cut(s)	157, 878
BanII	GRGCYC	1 cut(s)	917
BbvI	GCAGC	4 cut(s)	580, 660, 914, 1103
BccI	CCATC	3 cut(s)	204, 568, 762
BceAI	ACGGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	6 cut(s)	139, 173, 329, 363, 655, 689
BciT130I	CCWGG	2 cut(s)	128, 279
BciVI	GTATCC	1 cut(s)	726
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	2 cut(s)	486, 822
BfmI	CTRYAG	2 cut(s)	797, 1000
BfuI	GTATCC	1 cut(s)	726
BisI	GCNGC	4 cut(s)	569, 674, 903, 1092
BlsI	GCNGC	4 cut(s)	570, 675, 904, 1093
Bme1390I	CCNGG	2 cut(s)	128, 279
Bme18I	GGWCC	2 cut(s)	124, 193
BmeRI	GACNNNNNGTC	1 cut(s)	82
BmeT110I	CYCGRG	2 cut(s)	758, 1073
BmgT120I	GGNCC	2 cut(s)	124, 193
BmiI	GGNNCC	3 cut(s)	23, 159, 880
BmrFI	CCNGG	2 cut(s)	128, 279
BmsI	GCATC	2 cut(s)	39, 660
BplI	GAGNNNNNCTC	2 cut(s)	1027, 1059
BpuEI	CTTGAG	2 cut(s)	482, 605
Bsa29I	ATCGAT	1 cut(s)	733
BsaJI	CCNNGG	2 cut(s)	189, 278
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	760, 1078
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	2 cut(s)	128, 279
BseCI	ATCGAT	1 cut(s)	733
BseDI	CCNNGG	2 cut(s)	189, 278
BseGI	GGATG	4 cut(s)	50, 560, 661, 847
BseLI	CCNNNNNNNGG	2 cut(s)	760, 1078
BseMII	CTCAG	2 cut(s)	903, 1058
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	113, 402
BseSI	GKGCMC	1 cut(s)	851
BseXI	GCAGC	4 cut(s)	580, 660, 914, 1103
BsgI	GTGCAG	2 cut(s)	777, 921
BshFI	GGCC	3 cut(s)	9, 141, 371
BshNI	GGYRCC	2 cut(s)	157, 878
BshVI	ATCGAT	1 cut(s)	733
BsiHKCI	CYCGRG	2 cut(s)	758, 1073
BslFI	GGGAC	1 cut(s)	910
BslI	CCNNNNNNNGG	2 cut(s)	760, 1078
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	910
BsnI	GGCC	3 cut(s)	9, 141, 371
BsoBI	CYCGRG	2 cut(s)	758, 1073
Bsp1286I	GDGCHC	2 cut(s)	851, 917
Bsp1407I	TGTACA	2 cut(s)	70, 292
Bsp143I	GATC	9 cut(s)	61, 114, 150, 304, 439, 481, 490, 730, 965
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	3 cut(s)	95, 893, 1118
BspANI	GGCC	3 cut(s)	9, 141, 371
BspCNI	CTCAG	2 cut(s)	902, 1057
BspDI	ATCGAT	1 cut(s)	733
BspLI	GGNNCC	3 cut(s)	23, 159, 880
BspMAI	CTGCAG	1 cut(s)	801
BspPI	GGATC	5 cut(s)	56, 312, 434, 476, 973
BspQI	GCTCTTC	1 cut(s)	456
BspT107I	GGYRCC	2 cut(s)	157, 878
BsrGI	TGTACA	2 cut(s)	70, 292
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	189, 278
BssMI	GATC	9 cut(s)	61, 114, 150, 304, 439, 481, 490, 730, 965
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	128, 279
Bst4CI	ACNGT	2 cut(s)	121, 768
Bst6I	CTCTTC	3 cut(s)	456, 501, 1016
BstAUI	TGTACA	2 cut(s)	70, 292
BstC8I	GCNNGC	2 cut(s)	474, 810
BstDEI	CTNAG	2 cut(s)	889, 1044
BstDSI	CCRYGG	1 cut(s)	189
BstENI	CCTNNNNNAGG	1 cut(s)	1076
BstF5I	GGATG	4 cut(s)	50, 560, 661, 847
BstKTI	GATC	9 cut(s)	64, 117, 153, 307, 442, 484, 493, 733, 968
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	9 cut(s)	61, 114, 150, 304, 439, 481, 490, 730, 965
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 509, 805, 899
BstNI	CCWGG	2 cut(s)	128, 279
BstNSI	RCATGY	1 cut(s)	812
BstSCI	CCNGG	2 cut(s)	126, 277
BstSFI	CTRYAG	2 cut(s)	797, 1000
BstSLI	GKGCMC	1 cut(s)	851
BstV1I	GCAGC	4 cut(s)	580, 660, 914, 1103
BstX2I	RGATCY	2 cut(s)	304, 439
BstYI	RGATCY	2 cut(s)	304, 439
Bsu15I	ATCGAT	1 cut(s)	733
BsuI	GTATCC	1 cut(s)	726
BsuRI	GGCC	3 cut(s)	9, 141, 371
BsuTUI	ATCGAT	1 cut(s)	733
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	50, 560, 661, 847
BtsI	GCAGTG	2 cut(s)	789, 794
BtsIMutI	CAGTG	3 cut(s)	789, 794, 1052
Cac8I	GCNNGC	2 cut(s)	474, 810
CaiI	CAGNNNCTG	1 cut(s)	950
Cfr13I	GGNCC	2 cut(s)	124, 193
ClaI	ATCGAT	1 cut(s)	733
Csp6I	GTAC	5 cut(s)	71, 205, 293, 879, 1069
CviAII	CATG	9 cut(s)	68, 133, 190, 434, 533, 677, 712, 809, 1033
CviQI	GTAC	5 cut(s)	71, 205, 293, 879, 1069
DdeI	CTNAG	2 cut(s)	889, 1044
DpnI	GATC	9 cut(s)	63, 116, 152, 306, 441, 483, 492, 732, 967
DpnII	GATC	9 cut(s)	61, 114, 150, 304, 439, 481, 490, 730, 965
DriI	GACNNNNNGTC	1 cut(s)	82
Eam1104I	CTCTTC	3 cut(s)	456, 501, 1016
Eam1105I	GACNNNNNGTC	1 cut(s)	82
EarI	CTCTTC	3 cut(s)	456, 501, 1016
EciI	GGCGGA	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	917
Eco47I	GGWCC	2 cut(s)	124, 193
Eco57I	CTGAAG	2 cut(s)	164, 525
Eco88I	CYCGRG	2 cut(s)	758, 1073
EcoNI	CCTNNNNNAGG	1 cut(s)	1076
EcoRII	CCWGG	2 cut(s)	126, 277
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	917
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	9 cut(s)	71, 136, 193, 437, 536, 680, 715, 812, 1036
FaqI	GGGAC	1 cut(s)	910
FatI	CATG	9 cut(s)	67, 132, 189, 433, 532, 676, 711, 808, 1032
FauI	CCCGC	1 cut(s)	886
Fnu4HI	GCNGC	4 cut(s)	569, 674, 903, 1092
FokI	GGATG	4 cut(s)	37, 547, 648, 854
FriOI	GRGCYC	1 cut(s)	917
Fsp4HI	GCNGC	4 cut(s)	569, 674, 903, 1092
FspBI	CTAG	2 cut(s)	486, 822
GluI	GCNGC	4 cut(s)	569, 674, 903, 1092
HaeIII	GGCC	3 cut(s)	9, 141, 371
Hin1II	CATG	9 cut(s)	71, 136, 193, 437, 536, 680, 715, 812, 1036
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	6 cut(s)	13, 180, 341, 355, 947, 1086
HphI	GGTGA	2 cut(s)	791, 1030
Hpy166II	GTNNAC	5 cut(s)	73, 111, 124, 207, 458
Hpy188I	TCNGA	5 cut(s)	360, 520, 666, 697, 912
Hpy188III	TCNNGA	2 cut(s)	758, 1075
Hpy8I	GTNNAC	5 cut(s)	73, 111, 124, 207, 458
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	695, 1072
HpyCH4III	ACNGT	2 cut(s)	121, 768
HpyCH4V	TGCA	8 cut(s)	248, 350, 437, 476, 676, 794, 799, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 509, 805, 899
HpyF3I	CTNAG	2 cut(s)	889, 1044
Hsp92II	CATG	9 cut(s)	71, 136, 193, 437, 536, 680, 715, 812, 1036
KpnI	GGTACC	1 cut(s)	882
Kzo9I	GATC	9 cut(s)	61, 114, 150, 304, 439, 481, 490, 730, 965
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	3 cut(s)	100, 228, 853
Lsp1109I	GCAGC	4 cut(s)	580, 660, 914, 1103
LweI	GCATC	2 cut(s)	39, 660
MaeI	CTAG	2 cut(s)	486, 822
MaeIII	GTNAC	2 cut(s)	779, 940
MalI	GATC	9 cut(s)	63, 116, 152, 306, 441, 483, 492, 732, 967
MboI	GATC	9 cut(s)	61, 114, 150, 304, 439, 481, 490, 730, 965
MboII	GAAGA	7 cut(s)	39, 387, 406, 443, 518, 679, 1033
MfeI	CAATTG	1 cut(s)	299
MflI	RGATCY	2 cut(s)	304, 439
MhlI	GDGCHC	2 cut(s)	851, 917
MluCI	AATT	4 cut(s)	299, 636, 746, 865
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	49
MseI	TTAA	3 cut(s)	383, 987, 1113
MspA1I	CMGCKG	1 cut(s)	893
MspR9I	CCNGG	2 cut(s)	128, 279
MunI	CAATTG	1 cut(s)	299
MvaI	CCWGG	2 cut(s)	128, 279
MwoI	GCNNNNNNNGC	4 cut(s)	15, 509, 805, 899
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	9 cut(s)	61, 114, 150, 304, 439, 481, 490, 730, 965
NlaIII	CATG	9 cut(s)	71, 136, 193, 437, 536, 680, 715, 812, 1036
NlaIV	GGNNCC	3 cut(s)	23, 159, 880
NmuCI	GTSAC	1 cut(s)	779
NspI	RCATGY	1 cut(s)	812
PaeI	GCATGC	1 cut(s)	812
PaeR7I	CTCGAG	2 cut(s)	758, 1073
PciSI	GCTCTTC	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	739
PfeI	GAWTC	5 cut(s)	13, 341, 355, 947, 1086
PkrI	GCNGC	4 cut(s)	570, 675, 904, 1093
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	126, 277
PspGI	CCWGG	2 cut(s)	126, 277
PspN4I	GGNNCC	3 cut(s)	23, 159, 880
PspPI	GGNCC	2 cut(s)	124, 193
PstI	CTGCAG	1 cut(s)	801
PstNI	CAGNNNCTG	1 cut(s)	950
PsuI	RGATCY	2 cut(s)	304, 439
RsaI	GTAC	5 cut(s)	72, 206, 294, 880, 1070
RsaNI	GTAC	5 cut(s)	71, 205, 293, 879, 1069
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	3 cut(s)	383, 987, 1113
SatI	GCNGC	4 cut(s)	569, 674, 903, 1092
Sau3AI	GATC	9 cut(s)	61, 114, 150, 304, 439, 481, 490, 730, 965
Sau96I	GGNCC	2 cut(s)	124, 193
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	128, 279
SduI	GDGCHC	2 cut(s)	851, 917
SfaNI	GCATC	2 cut(s)	39, 660
SfcI	CTRYAG	2 cut(s)	797, 1000
Sfr274I	CTCGAG	2 cut(s)	758, 1073
SinI	GGWCC	2 cut(s)	124, 193
SlaI	CTCGAG	2 cut(s)	758, 1073
SmlI	CTYRAG	4 cut(s)	461, 584, 758, 1073
SmoI	CTYRAG	4 cut(s)	461, 584, 758, 1073
SphI	GCATGC	1 cut(s)	812
Sse9I	AATT	4 cut(s)	299, 636, 746, 865
SsiI	CCGC	3 cut(s)	95, 893, 1118
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	2 cut(s)	486, 822
StyD4I	CCNGG	2 cut(s)	126, 277
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	121, 768
TaqI	TCGA	4 cut(s)	339, 733, 759, 1074
TasI	AATT	4 cut(s)	299, 636, 746, 865
TatI	WGTACW	3 cut(s)	70, 204, 292
TfiI	GAWTC	5 cut(s)	13, 341, 355, 947, 1086
Tru1I	TTAA	3 cut(s)	383, 987, 1113
Tru9I	TTAA	3 cut(s)	383, 987, 1113
TscAI	CASTG	3 cut(s)	796, 801, 1052
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	4 cut(s)	568, 673, 902, 1091
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	7 cut(s)	39, 378, 407, 521, 570, 700, 804
TspGWI	ACGGA	3 cut(s)	78, 321, 866
TspRI	CASTG	3 cut(s)	796, 801, 1052
VpaK11BI	GGWCC	2 cut(s)	124, 193
XagI	CCTNNNNNAGG	1 cut(s)	1076
XceI	RCATGY	1 cut(s)	812
XhoI	CTCGAG	2 cut(s)	758, 1073
XspI	CTAG	2 cut(s)	486, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.