Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3707465 .. 3717509

Gene Structure 10045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG044300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTTTACTTCAATTAAGAGATATGTGGATACAACCTTTAGTACAGAAGAAGAAGCCCCTGGCGTAGTATCCGTAAACCATGTCACAATCACAATGGTAGATGGAAGCTTACATCAGTCACAGCATCGTTGTGCTGAAGTTTATAACATAACTACTTCCCAACCATTAGTGCAGGGACAAACTCGAGTCTCCCCCGGCCACATTTTTGAGTTAGGCTTCTTCAGTCCTAATAACTCTGCTAACAAGTATGTGGGGATATGGCACAGGGATATATCTCCGAGGAAAGTTGTATGGGTGGCCAATAGAGAAAACCCTCTTGCAGGTGCAGATACCTTGGCTAGATTGACAATTAGTATCAATGGGATTCTTGAGCTTGTAGATGGGAAGCGGAATGCTGTGTGGTCAACCAAAAGTTGCAAACATGGATTGGTCAGTGGGGAAAGAAAGAAAAGTCCTATACATATTGACTTTCTTGTGGATAGTGTTTTTTATTTCTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

167

Amino Acids

18.68

Weight (kDa)

7.85

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	96 - 138	1e-08	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	144
AarI	CACCTGC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	311
AciI	CCGC	1 cut(s)	388
AcoI	YGGCCR	2 cut(s)	196, 297
AcuI	CTGAAG	2 cut(s)	156, 205
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	2 cut(s)	108, 373
AluI	AGCT	2 cut(s)	108, 373
Alw26I	GTCTC	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	2 cut(s)	196, 297
AsuC2I	CCSGG	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	299
BccI	CCATC	2 cut(s)	95, 374
BciT130I	CCWGG	1 cut(s)	60
BciVI	GTATCC	2 cut(s)	22, 79
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	311
BfuI	GTATCC	2 cut(s)	22, 79
Bme1390I	CCNGG	2 cut(s)	60, 195
BmeT110I	CYCGRG	1 cut(s)	183
BmrFI	CCNGG	2 cut(s)	60, 195
BmsI	GCATC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	58, 193, 278, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	4 cut(s)	58, 193, 278, 333
BseLI	CCNNNNNNNGG	1 cut(s)	320
BsgI	GTGCAG	2 cut(s)	191, 345
BshFI	GGCC	2 cut(s)	198, 299
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	198, 299
BsoBI	CYCGRG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	2 cut(s)	198, 299
BspMI	ACCTGC	1 cut(s)	311
BssECI	CCNNGG	4 cut(s)	58, 193, 278, 333
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	2 cut(s)	58, 193
BsuI	GTATCC	2 cut(s)	22, 79
BsuRI	GGCC	2 cut(s)	198, 299
BtsIMutI	CAGTG	1 cut(s)	439
BveI	ACCTGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	2 cut(s)	80, 422
CviJI	RGCY	7 cut(s)	56, 108, 198, 216, 299, 338, 373
CviKI_1	RGCY	7 cut(s)	56, 108, 198, 216, 299, 338, 373
CviQI	GTAC	1 cut(s)	42
EaeI	YGGCCR	2 cut(s)	196, 297
Eco130I	CCWWGG	1 cut(s)	333
Eco57I	CTGAAG	2 cut(s)	156, 205
Eco88I	CYCGRG	1 cut(s)	183
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	83, 425
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	2 cut(s)	79, 421
FspBI	CTAG	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	198, 299
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	2 cut(s)	83, 425
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	2 cut(s)	186, 364
HpaII	CCGG	1 cut(s)	195
Hpy166II	GTNNAC	3 cut(s)	6, 76, 405
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	3 cut(s)	6, 76, 405
HpyCH4V	TGCA	4 cut(s)	172, 320, 326, 417
Hsp92II	CATG	2 cut(s)	83, 425
LpnPI	CCDG	6 cut(s)	45, 72, 158, 208, 250, 306
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	82, 117
MboII	GAAGA	3 cut(s)	59, 62, 211
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	2 cut(s)	12, 348
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	2 cut(s)	273, 324
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	129
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	60, 195
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	60
NciI	CCSGG	1 cut(s)	195
NlaIII	CATG	2 cut(s)	83, 425
NmuCI	GTSAC	2 cut(s)	82, 117
PaeR7I	CTCGAG	1 cut(s)	183
PaqCI	CACCTGC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	364
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PsiI	TTATAA	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspXI	VCTCGAGB	1 cut(s)	183
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	15
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	60, 195
SetI	ASST	5 cut(s)	38, 110, 325, 335, 375
SfaNI	GCATC	1 cut(s)	133
Sfr274I	CTCGAG	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	183, 368
SmoI	CTYRAG	2 cut(s)	183, 368
Sse9I	AATT	2 cut(s)	12, 348
SsiI	CCGC	1 cut(s)	388
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	58, 193
StyI	CCWWGG	1 cut(s)	333
TaqI	TCGA	1 cut(s)	184
TasI	AATT	2 cut(s)	12, 348
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	82, 117
Tsp45I	GTSAC	2 cut(s)	82, 117
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	439
XagI	CCTNNNNNAGG	1 cut(s)	318
XhoI	CTCGAG	1 cut(s)	183
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.