Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8731477 .. 8737137

Gene Structure 5661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG095500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGATTTGAAAACGACGCCGTTGCGGTTCACTCTGGGCAAGCAGTCGTCTCTGGCGCCGGAGCGTGAATCCGACGCCGGAGACGCGGAGGAGGACGAGGTGGAGGTGATCGATCCCCGAGTGAGGCTCATGTACTTGGCCAATGAAGCCGACTTGGACGGGATCAAGGAGCTTCTCGATTCCGGCATCGACGTCAATTTCCGCGACATCGATAATCGGACGGCGCTGCATGTCGCCGCGTGTCAGGGCTACTCCGACGTCGTTTCGCTGCTGCTTGAGCGCGGAGCTGATGTTAATACTAAAGATCGCTGGGGCAGCTCCCCTCTTGCAGATGCTATATACTATAAGAACCATGATGTGATCAAGCTTCTGGAGAAGCGTGGCGCGAAGCCTCTGATGGCACCAATGCGCGTTAAGTATGCGAGAGAAGTTCCCGAATATGAAATTGATCCCAAGGAGCTTGATTTTACTAACAGTGTTGAAATAACCAAGGGAACATTCCATTTAGCATCTTGGCGCGGAATACAGGTTGCTGTGAAAAGGCTTGCGGAGGAACTAATTGTTGATGAGGCTAAAGTGAAGGCATTTACAGATGAGCTTGCATTGCTTCAAAAGATACGGCATCCAAATGTAGTGCAATTTCTGGGTGCAGTAACTCAAAGTAGTCCAATGATGATTGTAACAGAATACTTGCCTAAGGGAGACCTACGTGCATTTTTAAAAAGAAAAGGAGCATTGAAACCGTCGACAGCTGTGAGATTTGCACTTGATATTGCAAGGGGAATGAATTATTTGCATGAGAATAAACCAGCACCAATTATTCATCGTGATCTTGAGCCTTCAAATATATTGCGAGATGATTCTGGGACCATAAAAGTTGCTGATTTTGGAGTGAGCAAGTTGCTGACAGTTAAAGAAGATAAGCCTTTGATTTGTCAAGATGCTTCATGTCGATACATAGCTCCTGAGGTTTCTAAGAATGAAGAATATGATACAAAAGTGGATGTATTCTCTTTTGCTTTAATCCTACAAGAGGTAGATGGTTCATTTCTGAATCCTAGACTAGTTTCATCTATGAAGACATTGTCATGCCATCTTAGTGCATGGTTCCACACCCATGTTATACATCAACTGTCTCTTTCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_5 Pkinase_Tyr

Protein Analysis

382

Amino Acids

42.83

Weight (kDa)

5.66

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	43 - 130	8.2e-16	Ankyrin repeats (3 copies)
Ank_4	PF13637	43 - 92	1.7e-06	Ankyrin repeats (many copies)
Ank_5	PF13857	58 - 109	2.5e-08	Ankyrin repeats (many copies)
Ank	PF00023	71 - 103	7.1e-09	Ankyrin repeat
PK_Tyr_Ser-Thr	PF07714	161 - 346	1.1e-43	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	172 - 346	9.4e-41	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	195, 261
AccB1I	GGYRCC	2 cut(s)	55, 400
AccI	GTMKAC	1 cut(s)	746
AccII	CGCG	7 cut(s)	86, 204, 239, 282, 386, 411, 519
AciI	CCGC	7 cut(s)	25, 86, 202, 237, 282, 519, 548
AclWI	GGATC	3 cut(s)	107, 170, 443
AcoI	YGGCCR	1 cut(s)	138
AcyI	GRCGYC	5 cut(s)	17, 56, 75, 192, 258
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	123, 1033
AgsI	TTSAA	6 cut(s)	10, 482, 611, 739, 843, 1143
AhlI	ACTAGT	1 cut(s)	1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	8 cut(s)	172, 287, 318, 367, 460, 598, 752, 962
AluI	AGCT	8 cut(s)	172, 287, 318, 367, 460, 598, 752, 962
Alw26I	GTCTC	4 cut(s)	54, 75, 696, 1140
AlwI	GGATC	3 cut(s)	107, 170, 443
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	4 cut(s)	226, 268, 271, 315
AspLEI	GCGC	6 cut(s)	58, 226, 282, 386, 411, 519
AspS9I	GGNCC	1 cut(s)	867
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	867
AxyI	CCTNAGG	2 cut(s)	696, 966
BaeI	ACNNNNGTAYC	2 cut(s)	984, 1017
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	2 cut(s)	55, 400
BbsI	GAAGAC	1 cut(s)	1085
BbvI	GCAGC	4 cut(s)	213, 255, 258, 327
BccI	CCATC	3 cut(s)	391, 1034, 1101
BceAI	ACGGC	3 cut(s)	4, 237, 635
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	4 cut(s)	54, 75, 696, 1140
BcuI	ACTAGT	1 cut(s)	1063
BfaI	CTAG	2 cut(s)	1059, 1064
BfoI	RGCGCY	2 cut(s)	59, 227
BisI	GCNGC	5 cut(s)	227, 237, 269, 272, 316
BlsI	GCNGC	5 cut(s)	228, 238, 270, 273, 317
Bme18I	GGWCC	1 cut(s)	867
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	867
BmiI	GGNNCC	4 cut(s)	57, 402, 868, 1109
BmsI	GCATC	5 cut(s)	195, 322, 518, 631, 931
BpiI	GAAGAC	1 cut(s)	1085
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	1 cut(s)	392
BpuEI	CTTGAG	2 cut(s)	296, 854
Bsa29I	ATCGAT	2 cut(s)	111, 210
BsaAI	YACGTR	1 cut(s)	710
BsaHI	GRCGYC	5 cut(s)	17, 56, 75, 192, 258
BsaI	GGTCTC	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	453, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 1033
Bse21I	CCTNAGG	2 cut(s)	696, 966
Bse3DI	GCAATG	1 cut(s)	602
BseCI	ATCGAT	2 cut(s)	111, 210
BseDI	CCNNGG	2 cut(s)	453, 489
BseGI	GGATG	2 cut(s)	622, 1009
BseLI	CCNNNNNNNGG	2 cut(s)	123, 1033
BseMI	GCAATG	1 cut(s)	602
BseMII	CTCAG	1 cut(s)	957
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	4 cut(s)	213, 255, 258, 327
BseYI	CCCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	7 cut(s)	86, 204, 239, 282, 386, 411, 519
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	2 cut(s)	55, 400
BshVI	ATCGAT	2 cut(s)	111, 210
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	59, 78, 183
BslFI	GGGAC	1 cut(s)	880
BslI	CCNNNNNNNGG	2 cut(s)	123, 1033
BsmAI	GTCTC	4 cut(s)	54, 75, 696, 1140
BsmBI	CGTCTC	2 cut(s)	54, 75
BsmFI	GGGAC	1 cut(s)	880
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	696
BsoBI	CYCGRG	1 cut(s)	117
Bsp143I	GATC	7 cut(s)	108, 112, 162, 304, 360, 448, 829
BspACI	CCGC	7 cut(s)	25, 86, 202, 237, 282, 519, 548
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	958
BspDI	ATCGAT	2 cut(s)	111, 210
BspFNI	CGCG	7 cut(s)	86, 204, 239, 282, 386, 411, 519
BspLI	GGNNCC	4 cut(s)	57, 402, 868, 1109
BspPI	GGATC	3 cut(s)	107, 170, 443
BspT107I	GGYRCC	2 cut(s)	55, 400
BspTNI	GGTCTC	1 cut(s)	696
BsrDI	GCAATG	1 cut(s)	602
BssECI	CCNNGG	2 cut(s)	453, 489
BssMI	GATC	7 cut(s)	108, 112, 162, 304, 360, 448, 829
BssNI	GRCGYC	5 cut(s)	17, 56, 75, 192, 258
BssT1I	CCWWGG	2 cut(s)	453, 489
Bst4CI	ACNGT	4 cut(s)	476, 744, 910, 1134
BstACI	GRCGYC	5 cut(s)	17, 56, 75, 192, 258
BstBAI	YACGTR	1 cut(s)	710
BstC8I	GCNNGC	3 cut(s)	41, 546, 600
BstDEI	CTNAG	4 cut(s)	696, 966, 975, 1097
BstENI	CCTNNNNNAGG	1 cut(s)	1031
BstF5I	GGATG	2 cut(s)	622, 1009
BstFNI	CGCG	7 cut(s)	86, 204, 239, 282, 386, 411, 519
BstH2I	RGCGCY	2 cut(s)	59, 227
BstHHI	GCGC	6 cut(s)	58, 226, 282, 386, 411, 519
BstKTI	GATC	7 cut(s)	111, 115, 165, 307, 363, 451, 832
BstMAI	GTCTC	4 cut(s)	54, 75, 696, 1140
BstMBI	GATC	7 cut(s)	108, 112, 162, 304, 360, 448, 829
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 146, 277, 315, 604
BstNSI	RCATGY	1 cut(s)	233
BstUI	CGCG	7 cut(s)	86, 204, 239, 282, 386, 411, 519
BstV1I	GCAGC	4 cut(s)	213, 255, 258, 327
BstV2I	GAAGAC	1 cut(s)	1085
Bsu15I	ATCGAT	2 cut(s)	111, 210
Bsu36I	CCTNAGG	2 cut(s)	696, 966
BsuRI	GGCC	1 cut(s)	140
BsuTUI	ATCGAT	2 cut(s)	111, 210
BtsCI	GGATG	2 cut(s)	622, 1009
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	3 cut(s)	41, 546, 600
CfoI	GCGC	6 cut(s)	58, 226, 282, 386, 411, 519
Cfr13I	GGNCC	1 cut(s)	867
ClaI	ATCGAT	2 cut(s)	111, 210
CseI	GACGC	3 cut(s)	25, 83, 92
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	9 cut(s)	130, 230, 353, 797, 948, 1089, 1104, 1118, 1146
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	4 cut(s)	696, 966, 975, 1097
DinI	GGCGCC	1 cut(s)	57
DpnI	GATC	7 cut(s)	110, 114, 164, 306, 362, 450, 831
DpnII	GATC	7 cut(s)	108, 112, 162, 304, 360, 448, 829
DraI	TTTAAA	1 cut(s)	720
EaeI	YGGCCR	1 cut(s)	138
Eco130I	CCWWGG	2 cut(s)	453, 489
Eco31I	GGTCTC	1 cut(s)	696
Eco47I	GGWCC	1 cut(s)	867
Eco81I	CCTNAGG	2 cut(s)	696, 966
Eco88I	CYCGRG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	1031
EcoT14I	CCWWGG	2 cut(s)	453, 489
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	453, 489
Esp3I	CGTCTC	2 cut(s)	54, 75
FaeI	CATG	9 cut(s)	133, 233, 356, 800, 951, 1092, 1107, 1121, 1149
FaqI	GGGAC	1 cut(s)	880
FatI	CATG	9 cut(s)	129, 229, 352, 796, 947, 1088, 1103, 1117, 1145
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	746
Fnu4HI	GCNGC	5 cut(s)	227, 237, 269, 272, 316
FokI	GGATG	2 cut(s)	609, 1016
Fsp4HI	GCNGC	5 cut(s)	227, 237, 269, 272, 316
FspBI	CTAG	2 cut(s)	1059, 1064
GlaI	GCGC	6 cut(s)	57, 225, 281, 385, 410, 518
GluI	GCNGC	5 cut(s)	227, 237, 269, 272, 316
GsaI	CCCAGC	1 cut(s)	313
GsuI	CTGGAG	1 cut(s)	392
HaeII	RGCGCY	2 cut(s)	59, 227
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	3 cut(s)	59, 78, 183
HgaI	GACGC	3 cut(s)	25, 83, 92
HhaI	GCGC	6 cut(s)	58, 226, 282, 386, 411, 519
Hin1I	GRCGYC	5 cut(s)	17, 56, 75, 192, 258
Hin1II	CATG	9 cut(s)	133, 233, 356, 800, 951, 1092, 1107, 1121, 1149
Hin6I	GCGC	6 cut(s)	56, 224, 280, 384, 409, 517
HinP1I	GCGC	6 cut(s)	56, 224, 280, 384, 409, 517
HincII	GTYRAC	1 cut(s)	747
HindII	GTYRAC	1 cut(s)	747
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	4 cut(s)	68, 179, 860, 1054
HpaII	CCGG	3 cut(s)	59, 78, 183
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	30, 747
Hpy188I	TCNGA	5 cut(s)	73, 219, 256, 396, 1053
Hpy188III	TCNNGA	7 cut(s)	176, 371, 434, 827, 833, 938, 965
Hpy8I	GTNNAC	2 cut(s)	30, 747
Hpy99I	CGWCG	6 cut(s)	19, 77, 194, 260, 263, 748
HpyAV	CCTTC	2 cut(s)	574, 849
HpyCH4III	ACNGT	4 cut(s)	476, 744, 910, 1134
HpyCH4IV	ACGT	3 cut(s)	192, 258, 709
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 146, 277, 315, 604
HpyF3I	CTNAG	4 cut(s)	696, 966, 975, 1097
HpySE526I	ACGT	3 cut(s)	192, 258, 709
Hsp92I	GRCGYC	5 cut(s)	17, 56, 75, 192, 258
Hsp92II	CATG	9 cut(s)	133, 233, 356, 800, 951, 1092, 1107, 1121, 1149
HspAI	GCGC	6 cut(s)	56, 224, 280, 384, 409, 517
KasI	GGCGCC	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	7 cut(s)	108, 112, 162, 304, 360, 448, 829
LmnI	GCTCC	7 cut(s)	61, 169, 284, 323, 457, 731, 967
Lsp1109I	GCAGC	4 cut(s)	213, 255, 258, 327
LweI	GCATC	5 cut(s)	195, 322, 518, 631, 931
MaeI	CTAG	2 cut(s)	1059, 1064
MaeII	ACGT	3 cut(s)	192, 258, 709
MaeIII	GTNAC	2 cut(s)	652, 679
MalI	GATC	7 cut(s)	110, 114, 164, 306, 362, 450, 831
MboI	GATC	7 cut(s)	108, 112, 162, 304, 360, 448, 829
MboII	GAAGA	3 cut(s)	929, 995, 1090
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	6 cut(s)	196, 444, 558, 638, 787, 816
MluNI	TGGCCA	1 cut(s)	140
Mly113I	GGCGCC	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	96, 279
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	5 cut(s)	294, 414, 719, 912, 1022
MslI	CAYNNNNRTG	4 cut(s)	627, 1087, 1098, 1116
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	3 cut(s)	59, 78, 183
MvnI	CGCG	7 cut(s)	86, 204, 239, 282, 386, 411, 519
MwoI	GCNNNNNNNGC	5 cut(s)	83, 146, 277, 315, 604
NarI	GGCGCC	1 cut(s)	56
NdeII	GATC	7 cut(s)	108, 112, 162, 304, 360, 448, 829
NlaIII	CATG	9 cut(s)	133, 233, 356, 800, 951, 1092, 1107, 1121, 1149
NlaIV	GGNNCC	4 cut(s)	57, 402, 868, 1109
NspI	RCATGY	1 cut(s)	233
PfeI	GAWTC	4 cut(s)	68, 179, 860, 1054
PflFI	GACNNNGTC	1 cut(s)	1084
PkrI	GCNGC	5 cut(s)	228, 238, 270, 273, 317
PluTI	GGCGCC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	710
PspFI	CCCAGC	1 cut(s)	309
PspN4I	GGNNCC	4 cut(s)	57, 402, 868, 1109
PspPI	GGNCC	1 cut(s)	867
PsyI	GACNNNGTC	1 cut(s)	1084
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	4 cut(s)	627, 1087, 1098, 1116
SalI	GTCGAC	1 cut(s)	745
SaqAI	TTAA	5 cut(s)	294, 414, 719, 912, 1022
SatI	GCNGC	5 cut(s)	227, 237, 269, 272, 316
Sau3AI	GATC	7 cut(s)	108, 112, 162, 304, 360, 448, 829
Sau96I	GGNCC	1 cut(s)	867
SfaNI	GCATC	5 cut(s)	195, 322, 518, 631, 931
SfoI	GGCGCC	1 cut(s)	57
SinI	GGWCC	1 cut(s)	867
SmiMI	CAYNNNNRTG	4 cut(s)	627, 1087, 1098, 1116
SmlI	CTYRAG	2 cut(s)	275, 833
SmoI	CTYRAG	2 cut(s)	275, 833
SpeI	ACTAGT	1 cut(s)	1063
Sse9I	AATT	6 cut(s)	196, 444, 558, 638, 787, 816
SsiI	CCGC	7 cut(s)	25, 86, 202, 237, 282, 519, 548
SspDI	GGCGCC	1 cut(s)	55
SspMI	CTAG	2 cut(s)	1059, 1064
StyI	CCWWGG	2 cut(s)	453, 489
TaaI	ACNGT	4 cut(s)	476, 744, 910, 1134
TaiI	ACGT	3 cut(s)	195, 261, 712
TaqI	TCGA	6 cut(s)	111, 177, 189, 210, 746, 952
TasI	AATT	6 cut(s)	196, 444, 558, 638, 787, 816
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	4 cut(s)	68, 179, 860, 1054
Tru1I	TTAA	5 cut(s)	294, 414, 719, 912, 1022
Tru9I	TTAA	5 cut(s)	294, 414, 719, 912, 1022
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	4 cut(s)	226, 268, 271, 315
TspDTI	ATGAA	9 cut(s)	159, 456, 800, 812, 936, 996, 1035, 1059, 1091
TspRI	CASTG	1 cut(s)	481
Tth111I	GACNNNGTC	1 cut(s)	1084
VpaK11BI	GGWCC	1 cut(s)	867
XagI	CCTNNNNNAGG	1 cut(s)	1031
XceI	RCATGY	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	746
XspI	CTAG	2 cut(s)	1059, 1064
ZraI	GACGTC	2 cut(s)	193, 259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.