Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24574733 .. 24583008

Gene Structure 8276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG208500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGACTTCTGAAAGCTCAGAATTTGCCAGGAACACTTCCGTCAGAGTTGGCAAGGCTTCCCTATCTCCAACAAATATTCTTAACTGGAAATGTGCTGAATGGATCCGAGCCTCTGTGGATTCAGGGAGACAATGCGTAAGTGATCTTTCATATAACAATTTCACCCCAGAGCCTGTAGATTGTAAGCAAGCTGGCAGGAACTTGTTTGCAAGCTCTTCAAAGGGCAACAATTCAGCTGTTTCGTGTTTGAGCAATAAAACTACAACATGTTCAAAAAGGACAAAATGGTGCGATTGTTACTCAACAGTGGCAGTTGCAGTATGGTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

110

Amino Acids

12.02

Weight (kDa)

8.87

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	97, 110
AcsI	RAATTY	1 cut(s)	20
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	219, 273
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	4 cut(s)	15, 191, 213, 236
AluI	AGCT	4 cut(s)	15, 191, 213, 236
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	2 cut(s)	97, 110
AlwNI	CAGNNNCTG	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	121
BfmI	CTRYAG	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	102, 142
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	104
BspPI	GGATC	2 cut(s)	97, 110
BspQI	GCTCTTC	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	89
BssMI	GATC	2 cut(s)	102, 142
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	220
BstC8I	GCNNGC	3 cut(s)	189, 193, 211
BstDEI	CTNAG	1 cut(s)	16
BstKTI	GATC	2 cut(s)	105, 145
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	102, 142
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	189, 193, 211
CaiI	CAGNNNCTG	1 cut(s)	173
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	7 cut(s)	15, 56, 110, 172, 191, 213, 236
CviKI_1	RGCY	7 cut(s)	15, 56, 110, 172, 191, 213, 236
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	2 cut(s)	104, 144
DpnII	GATC	2 cut(s)	102, 142
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	270
FaiI	YATR	4 cut(s)	151, 153, 268, 322
FatI	CATG	1 cut(s)	266
Hin1II	CATG	1 cut(s)	270
HinfI	GANTC	1 cut(s)	119
HphI	GGTGA	1 cut(s)	154
Hpy188I	TCNGA	4 cut(s)	10, 19, 44, 107
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	2 cut(s)	209, 317
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	102, 142
LguI	GCTCTTC	1 cut(s)	220
LpnPI	CCDG	8 cut(s)	13, 40, 70, 108, 177, 180, 181, 186
MaeIII	GTNAC	2 cut(s)	296, 326
MalI	GATC	2 cut(s)	104, 144
MboI	GATC	2 cut(s)	102, 142
MboII	GAAGA	1 cut(s)	207
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	3 cut(s)	20, 157, 229
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	1 cut(s)	121
MseI	TTAA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	102, 142
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	270
PciI	ACATGT	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	119
PscI	ACATGT	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	104
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	102, 142
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	4 cut(s)	17, 193, 215, 238
SfcI	CTRYAG	1 cut(s)	174
Sse9I	AATT	3 cut(s)	20, 157, 229
SspI	AATATT	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	307
TasI	AATT	3 cut(s)	20, 157, 229
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	312
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.