Rh5AG419900
HSP70 Family

Belongs to the heat shock protein 70 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
N/A
Physical Location & Seq
Reverse (-)
72387021 .. 72387365
345 bp
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UTR
Exon/CDS
Intron
Rh5AG419900.1

Sequence Viewer

Length: 309 bp
ATGGATCTCTTCAAAACATGTTTGGAGCCTGTGAAGAAGTGTTTGTCAGATGCTAAAATGGACAAGAGGGTTGTTCTTATCAGTAGTTCTACTAGAATTCCAAAGGAACTTTGCAAGAGCATCAATCTTGATGAAGTAGTTGCATATGGGGCCGCCATGCAAGCTGCAATCTTGGACAGTGAGTTTGAGAAGGTCAATGACTTGCTGTTGATGGATGTCACTCCACTTTCCCTCGATGTGGAGGTTATAGGAGGAATTATATCTGTTATCATCCCAAAAAACACGATCATTCCCACCGAGAAAGAATGA
Functional Annotation

Protein Analysis

102

Amino Acids

11.21

Weight (kDa)

4.82

Isoelectric Point (pI)

27.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 101 5e-26 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 153
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 96
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AspS9I GGNCC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 205
BfaI CTAG 1 cut(s) 93
BisI GCNGC 2 cut(s) 153, 165
BlsI GCNGC 2 cut(s) 154, 166
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 2 cut(s) 27, 151
BmsI GCATC 2 cut(s) 40, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 238
BseGI GGATG 2 cut(s) 220, 270
BseLI CCNNNNNNNGG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 151
BshFI GGCC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 238
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 4, 285
BspACI CCGC 1 cut(s) 153
BspANI GGCC 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 27, 151
BspPI GGATC 1 cut(s) 12
BssMI GATC 2 cut(s) 4, 285
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 162
BstF5I GGATG 2 cut(s) 220, 270
BstKTI GATC 2 cut(s) 7, 288
BstMBI GATC 2 cut(s) 4, 285
BstMWI GCNNNNNNNGC 2 cut(s) 149, 161
BstNSI RCATGY 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 2 cut(s) 220, 270
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 150
CviAII CATG 2 cut(s) 18, 157
CviJI RGCY 3 cut(s) 28, 152, 164
CviKI_1 RGCY 3 cut(s) 28, 152, 164
DpnI GATC 2 cut(s) 6, 287
DpnII GATC 2 cut(s) 4, 285
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 96
FaeI CATG 2 cut(s) 21, 160
FaiI YATR 6 cut(s) 19, 145, 147, 158, 248, 260
FatI CATG 2 cut(s) 17, 156
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 153, 165
FokI GGATG 2 cut(s) 227, 257
Fsp4HI GCNGC 2 cut(s) 153, 165
FspBI CTAG 1 cut(s) 93
GluI GCNGC 2 cut(s) 153, 165
HaeIII GGCC 1 cut(s) 152
Hin1II CATG 2 cut(s) 21, 160
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 4 cut(s) 114, 143, 160, 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 161
Hsp92II CATG 2 cut(s) 21, 160
Kzo9I GATC 2 cut(s) 4, 285
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 1 cut(s) 42
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 2 cut(s) 40, 129
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 217
MalI GATC 2 cut(s) 6, 287
MboI GATC 2 cut(s) 4, 285
MboII GAAGA 1 cut(s) 46
MflI RGATCY 1 cut(s) 4
MluCI AATT 2 cut(s) 96, 255
MnlI CCTC 4 cut(s) 60, 235, 242, 245
MwoI GCNNNNNNNGC 2 cut(s) 149, 161
NdeI CATATG 1 cut(s) 145
NdeII GATC 2 cut(s) 4, 285
NlaIII CATG 2 cut(s) 21, 160
NlaIV GGNNCC 2 cut(s) 27, 151
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 21
PciI ACATGT 1 cut(s) 17
PkrI GCNGC 2 cut(s) 154, 166
PscI ACATGT 1 cut(s) 17
PspN4I GGNNCC 2 cut(s) 27, 151
PspPI GGNCC 1 cut(s) 150
PsuI RGATCY 1 cut(s) 4
SatI GCNGC 2 cut(s) 153, 165
Sau3AI GATC 2 cut(s) 4, 285
Sau96I GGNCC 1 cut(s) 150
SetI ASST 3 cut(s) 166, 195, 246
SfaNI GCATC 2 cut(s) 40, 129
Sse9I AATT 2 cut(s) 96, 255
SsiI CCGC 1 cut(s) 153
SspMI CTAG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 96, 255
TauI GCSGC 1 cut(s) 155
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 1 cut(s) 184
XapI RAATTY 1 cut(s) 96
XceI RCATGY 1 cut(s) 21
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.