Rh5AG420000
HSP70 Family

Belongs to the heat shock protein 70 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
N/A
Physical Location & Seq
Reverse (-)
72387598 .. 72394497
6900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG420000.1

Sequence Viewer

Length: 471 bp
ATGGAGGCCACATTTTGGCTTTCAACAATAGCATTAGCTGCAAAAGGCAAACTTCCAGCTATTGGTATCGATCTTGGAACAATATATTCATGCGTTGGCGTTTGGCAAAACAATCACGTTGAGATCATACCCAATGAGAAGGGCAACAGAACAACGCCATCGTATGTTGCTTTTACAGACACTCGACGTTTGATTGGTGATGCTGCCAAAAACCAGGCTGCTATGAACCCCATCAAAATTGTTTTCGAGGCCACAAAGGATGTTAGTGTTATCGCTGGTTTGAATGTCATGCGCATCATCAATGAGCCAACAACTGTTGCCATGGCCTATGGTCTTGACAAATTATGCACAAATGTTGGTCAAAAGAATGTTCTTGTTTTTTATCTTGGTGGTGGTACTTTTGATTTTTCTCTTCTCACAATAGAAGAGGGAGTTTTTGTGGTAAAAGCATTGCGGGAAATACTCATCTAG
Functional Annotation

Protein Analysis

156

Amino Acids

16.94

Weight (kDa)

6.57

Isoelectric Point (pI)

27.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 20 - 83 7.4e-24 Hsp70 protein
HSP70 PF00012 84 - 150 5.2e-24 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 293
AccB7I CCANNNNNTGG 2 cut(s) 15, 62
AciI CCGC 1 cut(s) 454
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 2 cut(s) 15, 62
AgsI TTSAA 2 cut(s) 24, 283
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 2 cut(s) 38, 59
AluI AGCT 2 cut(s) 38, 59
AoxI GGCC 3 cut(s) 6, 249, 324
ApeKI GCWGC 3 cut(s) 38, 203, 218
AspLEI GCGC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 209
BbvI GCAGC 3 cut(s) 25, 190, 205
BccI CCATC 2 cut(s) 166, 239
BciT130I CCWGG 1 cut(s) 215
BfaI CTAG 1 cut(s) 469
BisI GCNGC 3 cut(s) 39, 204, 219
BlsI GCNGC 3 cut(s) 40, 205, 220
Bme1390I CCNGG 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 2 cut(s) 190, 303
Bsa29I ATCGAT 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 62
Bse3DI GCAATG 1 cut(s) 449
BseBI CCWGG 1 cut(s) 215
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 15, 62
BseMI GCAATG 1 cut(s) 449
BseXI GCAGC 3 cut(s) 25, 190, 205
BshFI GGCC 3 cut(s) 8, 251, 326
BshVI ATCGAT 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 15, 62
BsnI GGCC 3 cut(s) 8, 251, 326
Bsp143I GATC 2 cut(s) 70, 123
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 1 cut(s) 454
BspANI GGCC 3 cut(s) 8, 251, 326
BspDI ATCGAT 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 2 cut(s) 70, 123
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 2 cut(s) 417, 420
BstAPI GCANNNNNTGC 1 cut(s) 38
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 265
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 2 cut(s) 73, 126
BstMBI GATC 2 cut(s) 70, 123
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstV1I GCAGC 3 cut(s) 25, 190, 205
Bsu15I ATCGAT 1 cut(s) 69
BsuRI GGCC 3 cut(s) 8, 251, 326
BsuTUI ATCGAT 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 1 cut(s) 265
CfoI GCGC 1 cut(s) 294
ClaI ATCGAT 1 cut(s) 69
Csp6I GTAC 1 cut(s) 396
CviAII CATG 3 cut(s) 90, 289, 322
CviJI RGCY 8 cut(s) 8, 19, 38, 59, 218, 251, 307, 326
CviKI_1 RGCY 8 cut(s) 8, 19, 38, 59, 218, 251, 307, 326
CviQI GTAC 1 cut(s) 396
DpnI GATC 2 cut(s) 72, 125
DpnII GATC 2 cut(s) 70, 123
Eam1104I CTCTTC 2 cut(s) 417, 420
EarI CTCTTC 2 cut(s) 417, 420
Eco130I CCWWGG 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 3 cut(s) 93, 292, 325
FaiI YATR 9 cut(s) 85, 91, 128, 165, 224, 290, 323, 330, 346
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 3 cut(s) 89, 288, 321
FauI CCCGC 1 cut(s) 447
Fnu4HI GCNGC 3 cut(s) 39, 204, 219
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 39, 204, 219
FspAI RTGCGCAY 1 cut(s) 293
FspBI CTAG 1 cut(s) 469
FspI TGCGCA 1 cut(s) 293
GlaI GCGC 1 cut(s) 293
GluI GCNGC 3 cut(s) 39, 204, 219
HaeIII GGCC 3 cut(s) 8, 251, 326
HhaI GCGC 1 cut(s) 294
Hin1II CATG 3 cut(s) 93, 292, 325
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HphI GGTGA 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 335
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 2 cut(s) 117, 187
HpyCH4V TGCA 2 cut(s) 41, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpySE526I ACGT 2 cut(s) 117, 187
Hsp92II CATG 3 cut(s) 93, 292, 325
HspAI GCGC 1 cut(s) 292
Kzo9I GATC 2 cut(s) 70, 123
LpnPI CCDG 4 cut(s) 69, 200, 227, 261
Lsp1109I GCAGC 3 cut(s) 25, 190, 205
LweI GCATC 2 cut(s) 190, 303
MaeI CTAG 1 cut(s) 469
MaeII ACGT 2 cut(s) 117, 187
MalI GATC 2 cut(s) 72, 125
MboI GATC 2 cut(s) 70, 123
MboII GAAGA 2 cut(s) 404, 437
MluCI AATT 2 cut(s) 237, 341
MnlI CCTC 2 cut(s) 241, 421
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 38
NcoI CCATGG 1 cut(s) 321
NdeII GATC 2 cut(s) 70, 123
NlaIII CATG 3 cut(s) 93, 292, 325
NsbI TGCGCA 1 cut(s) 293
PflMI CCANNNNNTGG 2 cut(s) 15, 62
PkrI GCNGC 3 cut(s) 40, 205, 220
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
SatI GCNGC 3 cut(s) 39, 204, 219
Sau3AI GATC 2 cut(s) 70, 123
ScrFI CCNGG 1 cut(s) 215
SetI ASST 4 cut(s) 40, 61, 120, 190
SfaNI GCATC 2 cut(s) 190, 303
Sse9I AATT 2 cut(s) 237, 341
SsiI CCGC 1 cut(s) 454
SspMI CTAG 1 cut(s) 469
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 2 cut(s) 120, 190
TaqI TCGA 3 cut(s) 69, 184, 246
TasI AATT 2 cut(s) 237, 341
TseI GCWGC 3 cut(s) 38, 203, 218
TspDTI ATGAA 2 cut(s) 78, 239
Van91I CCANNNNNTGG 2 cut(s) 15, 62
XspI CTAG 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.