Rh5AG420400

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
N/A
Physical Location & Seq
Forward (+)
72488287 .. 72490751
2465 bp
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UTR
Exon/CDS
Intron
Rh5AG420400.1

Sequence Viewer

Length: 237 bp
ATGGGAGCTCGAATGAGCAAAGACATGGTCAACATCAATTCAGCTGGCCAGCACACCGTGGACATCCTTGAGAGCCTACCCCAGAATGTCAAAACGCGGGCTGAGGTTATTAGAGAAATTCAGCGTCAATATGATGAGTTACAGACCAAGTTCTTCAAGGAGAGAGCAGCACTTGAAGCTAAGTATCAGAAATTGTATCAACCTCTTTCTGACCTCTATTCAGAAAGAGATACATGA

Protein Analysis

78

Amino Acids

9.14

Weight (kDa)

6.57

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 33 - 71 1.3e-06 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 97
AciI CCGC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 157, 176
AluBI AGCT 3 cut(s) 8, 44, 179
AluI AGCT 3 cut(s) 8, 44, 179
Alw21I GWGCWC 1 cut(s) 10
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
BalI TGGCCA 1 cut(s) 48
BanII GRGCYC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 10
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 179
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 10
BsnI GGCC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 10
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 3 cut(s) 46, 50, 99
BstDEI CTNAG 2 cut(s) 102, 180
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 46, 50, 99
CseI GACGC 1 cut(s) 113
CviAII CATG 2 cut(s) 25, 234
CviJI RGCY 6 cut(s) 8, 44, 48, 75, 101, 179
CviKI_1 RGCY 6 cut(s) 8, 44, 48, 75, 101, 179
DdeI CTNAG 2 cut(s) 102, 180
DraIII CACNNNGTG 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 10
FaeI CATG 2 cut(s) 28, 237
FaiI YATR 3 cut(s) 26, 132, 235
FatI CATG 2 cut(s) 24, 233
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 48
HgaI GACGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 28, 237
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 31, 61
Hpy188I TCNGA 3 cut(s) 189, 211, 223
Hpy8I GTNNAC 2 cut(s) 31, 61
HpyCH4III ACNGT 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 102, 180
Hsp92II CATG 2 cut(s) 28, 237
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 30, 62, 95
Lsp1109I GCAGC 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 138
MboII GAAGA 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 10
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 3 cut(s) 37, 117, 191
MluNI TGGCCA 1 cut(s) 48
MnlI CCTC 3 cut(s) 97, 213, 224
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 44
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 176
NlaIII CATG 2 cut(s) 28, 237
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 10
PsyI GACNNNGTC 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 44
SacI GAGCTC 1 cut(s) 10
SatI GCNGC 1 cut(s) 168
SduI GDGCHC 1 cut(s) 10
SetI ASST 6 cut(s) 10, 46, 108, 181, 205, 216
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 3 cut(s) 37, 117, 191
SsiI CCGC 1 cut(s) 97
SstI GAGCTC 1 cut(s) 10
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 10
TasI AATT 3 cut(s) 37, 117, 191
TseI GCWGC 1 cut(s) 167
Tth111I GACNNNGTC 1 cut(s) 26
XapI RAATTY 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.