Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

89617586 .. 89622404

Gene Structure 4819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG522400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTTGGTTTTCTTAGATCTTGTATATGATTGTGGCCATGCCATAATAAACAAATATAAAAGGAGGGACCATGGGGAAATTCGTAAATTGACCGTGCCGGCACCTCGGATCGGGAATGCTGATATCCCACCGGAGGATGGCTTCACTTGGCGAAAATATGGCCAGAAGGACGTCATGGGCTGCAGGTTCCCAAGGGGCTACTATAGGTGTATCCACCGATATTTATACAATTGCCCAGCCACGAAGCAAGTTCAGAGGCTTGACAATGATCCCTTAACATTTGAAGTAATATACAGACGTGACCATACATGTCATATGTTACCCGCTGCACCCTCAAGCCGACCACCATCTGATCAAACTGTGGAGAGGTGCCCCCAGTTTTCAACGTCTGACTCCCATAGCAGGAACAAAGTCCAATTCAATCATCCACAACAATCGGACATTGTACAGGGAAGGAGGGACCATGGGGAAATTCGTAAATTGACCGTGCCGGCACCTCGGATCGGGAATGCTGATATCCCACCGGAGGATGGCTTCACTTGGCGAAAATATGGCCAGAAGGACGTCATGGGCTACAGGTTCCCAAGGGGCTACTATAGGTGTACCCACCGAAATTTATACAATTGCCCAGCCACGAAGCAAGTTCAGAGGCTTGACAATGATCCCTTAACATTTGAAGTAATATACAGAGATCGTGGTGATCTCCACCAGCATGGTGTCAGTGTCCGTCACACTGAAGCTCTCTGTTCCGGTGGCCGTGGACCTCGTGCAAGGGCAAGGGTGAATGGACTATCACTCCTATTCTTCATGATGCCACTGAGGTGCCAGTTATTTTCATCAATGTACCCTGGAAGGAAATGTTGCAGAGACGAGTTAATTTACTTTGTCACCTATGATATTCTTTTCAGCCAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

305

Amino Acids

35.57

Weight (kDa)

9.43

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	45 - 105	2.6e-23	WRKY DNA -binding domain
WRKY	PF03106	176 - 232	6e-22	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	174, 567
Acc36I	ACCTGC	1 cut(s)	174
AccB1I	GGYRCC	4 cut(s)	100, 369, 493, 822
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	4 cut(s)	116, 263, 509, 656
AcoI	YGGCCR	4 cut(s)	34, 160, 553, 754
AcsI	RAATTY	3 cut(s)	78, 471, 613
AcuI	CTGAAG	1 cut(s)	756
AcyI	GRCGYC	2 cut(s)	171, 564
AfaI	GTAC	3 cut(s)	447, 604, 845
AfiI	CCNNNNNNNGG	7 cut(s)	110, 133, 137, 402, 503, 526, 530
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	4 cut(s)	284, 384, 421, 677
AjiI	CACGTC	1 cut(s)	299
AjnI	CCWGG	2 cut(s)	847, 909
AleI	CACNNNNGTG	1 cut(s)	820
AluBI	AGCT	1 cut(s)	740
AluI	AGCT	1 cut(s)	740
Alw26I	GTCTC	1 cut(s)	861
AlwI	GGATC	4 cut(s)	116, 263, 509, 656
AoxI	GGCC	4 cut(s)	34, 160, 553, 754
ApeKI	GCWGC	2 cut(s)	180, 326
ApoI	RAATTY	3 cut(s)	78, 471, 613
AspS9I	GGNCC	3 cut(s)	67, 460, 761
AsuHPI	GGTGA	3 cut(s)	710, 793, 880
AvaII	GGWCC	3 cut(s)	67, 460, 761
BaeGI	GKGCMC	1 cut(s)	374
BalI	TGGCCA	3 cut(s)	36, 162, 555
BanI	GGYRCC	4 cut(s)	100, 369, 493, 822
BauI	CACGAG	1 cut(s)	765
BbvI	GCAGC	2 cut(s)	167, 313
BccI	CCATC	3 cut(s)	131, 355, 524
BceAI	ACGGC	1 cut(s)	741
BciT130I	CCWGG	2 cut(s)	849, 911
BciVI	GTATCC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	861
BfmI	CTRYAG	4 cut(s)	181, 202, 574, 595
BfuAI	ACCTGC	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	2 cut(s)	181, 327
BlsI	GCNGC	2 cut(s)	182, 328
Bme1390I	CCNGG	2 cut(s)	849, 911
Bme18I	GGWCC	3 cut(s)	67, 460, 761
BmgBI	CACGTC	1 cut(s)	299
BmgT120I	GGNCC	3 cut(s)	67, 460, 761
BmiI	GGNNCC	8 cut(s)	68, 102, 188, 371, 461, 495, 581, 824
BmrFI	CCNGG	2 cut(s)	849, 911
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	801
BmuI	ACTGGG	1 cut(s)	370
BpuEI	CTTGAG	1 cut(s)	319
BsaHI	GRCGYC	2 cut(s)	171, 564
BsaJI	CCNNGG	8 cut(s)	70, 104, 191, 463, 497, 584, 757, 847
BsaWI	WCCGGW	3 cut(s)	130, 523, 749
BsaXI	ACNNNNNCTCC	2 cut(s)	780, 810
Bsc4I	CCNNNNNNNGG	7 cut(s)	110, 133, 137, 402, 503, 526, 530
Bse118I	RCCGGY	2 cut(s)	97, 490
Bse1I	ACTGG	2 cut(s)	376, 826
BseBI	CCWGG	2 cut(s)	849, 911
BseDI	CCNNGG	8 cut(s)	70, 104, 191, 463, 497, 584, 757, 847
BseGI	GGATG	3 cut(s)	142, 424, 535
BseLI	CCNNNNNNNGG	7 cut(s)	110, 133, 137, 402, 503, 526, 530
BseMII	CTCAG	1 cut(s)	809
BseNI	ACTGG	2 cut(s)	376, 826
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	2 cut(s)	167, 313
BseYI	CCCAGC	2 cut(s)	235, 628
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	4 cut(s)	36, 162, 555, 756
BshNI	GGYRCC	4 cut(s)	100, 369, 493, 822
BsiSI	CCGG	5 cut(s)	98, 131, 491, 524, 750
BslFI	GGGAC	2 cut(s)	80, 473
BslI	CCNNNNNNNGG	7 cut(s)	110, 133, 137, 402, 503, 526, 530
BsmAI	GTCTC	1 cut(s)	861
BsmBI	CGTCTC	1 cut(s)	861
BsmFI	GGGAC	2 cut(s)	80, 473
BsmI	GAATGC	2 cut(s)	121, 514
BsnI	GGCC	4 cut(s)	36, 162, 555, 756
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp1407I	TGTACA	1 cut(s)	445
Bsp143I	GATC	8 cut(s)	16, 108, 268, 352, 501, 661, 691, 700
Bsp19I	CCATGG	2 cut(s)	70, 463
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	4 cut(s)	36, 162, 555, 756
BspCNI	CTCAG	1 cut(s)	810
BspHI	TCATGA	1 cut(s)	807
BspLI	GGNNCC	8 cut(s)	68, 102, 188, 371, 461, 495, 581, 824
BspMAI	CTGCAG	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	4 cut(s)	116, 263, 509, 656
BspT107I	GGYRCC	4 cut(s)	100, 369, 493, 822
BsrFI	RCCGGY	2 cut(s)	97, 490
BsrGI	TGTACA	1 cut(s)	445
BsrI	ACTGG	2 cut(s)	376, 826
BssAI	RCCGGY	2 cut(s)	97, 490
BssECI	CCNNGG	8 cut(s)	70, 104, 191, 463, 497, 584, 757, 847
BssMI	GATC	8 cut(s)	16, 108, 268, 352, 501, 661, 691, 700
BssNI	GRCGYC	2 cut(s)	171, 564
BssSI	CACGAG	1 cut(s)	765
BssT1I	CCWWGG	4 cut(s)	70, 191, 463, 584
Bst2BI	CACGAG	1 cut(s)	765
Bst2UI	CCWGG	2 cut(s)	849, 911
Bst4CI	ACNGT	3 cut(s)	94, 361, 487
BstACI	GRCGYC	2 cut(s)	171, 564
BstAUI	TGTACA	1 cut(s)	445
BstC8I	GCNNGC	2 cut(s)	99, 492
BstDEI	CTNAG	2 cut(s)	13, 818
BstDSI	CCRYGG	3 cut(s)	70, 463, 757
BstF5I	GGATG	3 cut(s)	142, 424, 535
BstKTI	GATC	8 cut(s)	19, 111, 271, 355, 504, 664, 694, 703
BstMAI	GTCTC	1 cut(s)	861
BstMBI	GATC	8 cut(s)	16, 108, 268, 352, 501, 661, 691, 700
BstNI	CCWGG	2 cut(s)	849, 911
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	847, 909
BstSFI	CTRYAG	4 cut(s)	181, 202, 574, 595
BstSLI	GKGCMC	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	167, 313
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	16
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	4 cut(s)	36, 162, 555, 756
BtgI	CCRYGG	3 cut(s)	70, 463, 757
BtrI	CACGTC	1 cut(s)	299
BtsCI	GGATG	3 cut(s)	142, 424, 535
BtsIMutI	CAGTG	3 cut(s)	727, 732, 815
BveI	ACCTGC	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	99, 492
CciI	TCATGA	1 cut(s)	807
Cfr10I	RCCGGY	2 cut(s)	97, 490
Cfr13I	GGNCC	3 cut(s)	67, 460, 761
Csp6I	GTAC	3 cut(s)	446, 603, 844
CviAII	CATG	8 cut(s)	38, 71, 175, 309, 464, 568, 713, 808
CviQI	GTAC	3 cut(s)	446, 603, 844
DdeI	CTNAG	2 cut(s)	13, 818
DpnI	GATC	8 cut(s)	18, 110, 270, 354, 503, 663, 693, 702
DpnII	GATC	8 cut(s)	16, 108, 268, 352, 501, 661, 691, 700
EaeI	YGGCCR	4 cut(s)	34, 160, 553, 754
Eco130I	CCWWGG	4 cut(s)	70, 191, 463, 584
Eco32I	GATATC	2 cut(s)	124, 517
Eco47I	GGWCC	3 cut(s)	67, 460, 761
Eco57I	CTGAAG	1 cut(s)	756
EcoRII	CCWGG	2 cut(s)	847, 909
EcoRV	GATATC	2 cut(s)	124, 517
EcoT14I	CCWWGG	4 cut(s)	70, 191, 463, 584
ErhI	CCWWGG	4 cut(s)	70, 191, 463, 584
Esp3I	CGTCTC	1 cut(s)	861
FaeI	CATG	8 cut(s)	41, 74, 178, 312, 467, 571, 716, 811
FaqI	GGGAC	2 cut(s)	80, 473
FatI	CATG	8 cut(s)	37, 70, 174, 308, 463, 567, 712, 807
FauI	CCCGC	1 cut(s)	331
FauNDI	CATATG	1 cut(s)	315
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	181, 327
FokI	GGATG	3 cut(s)	149, 411, 542
Fsp4HI	GCNGC	2 cut(s)	181, 327
GluI	GCNGC	2 cut(s)	181, 327
GsaI	CCCAGC	2 cut(s)	239, 632
HaeIII	GGCC	4 cut(s)	36, 162, 555, 756
HapII	CCGG	5 cut(s)	98, 131, 491, 524, 750
Hin1I	GRCGYC	2 cut(s)	171, 564
Hin1II	CATG	8 cut(s)	41, 74, 178, 312, 467, 571, 716, 811
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	5 cut(s)	98, 131, 491, 524, 750
HphI	GGTGA	3 cut(s)	710, 793, 880
Hpy166II	GTNNAC	2 cut(s)	603, 761
Hpy188I	TCNGA	7 cut(s)	108, 255, 352, 391, 439, 501, 648
Hpy188III	TCNNGA	3 cut(s)	112, 505, 808
Hpy8I	GTNNAC	2 cut(s)	603, 761
HpyAV	CCTTC	4 cut(s)	160, 447, 553, 846
HpyCH4III	ACNGT	3 cut(s)	94, 361, 487
HpyCH4IV	ACGT	4 cut(s)	171, 298, 386, 564
HpyCH4V	TGCA	4 cut(s)	183, 329, 770, 864
HpyF3I	CTNAG	2 cut(s)	13, 818
HpySE526I	ACGT	4 cut(s)	171, 298, 386, 564
Hsp92I	GRCGYC	2 cut(s)	171, 564
Hsp92II	CATG	8 cut(s)	41, 74, 178, 312, 467, 571, 716, 811
KroI	GCCGGC	2 cut(s)	97, 490
KroNI	GCCGGC	2 cut(s)	99, 492
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	8 cut(s)	16, 108, 268, 352, 501, 661, 691, 700
Lsp1109I	GCAGC	2 cut(s)	167, 313
LweI	GCATC	1 cut(s)	801
MaeII	ACGT	4 cut(s)	171, 298, 386, 564
MaeIII	GTNAC	4 cut(s)	299, 318, 728, 886
MalI	GATC	8 cut(s)	18, 110, 270, 354, 503, 663, 693, 702
MboI	GATC	8 cut(s)	16, 108, 268, 352, 501, 661, 691, 700
MboII	GAAGA	1 cut(s)	796
MfeI	CAATTG	2 cut(s)	229, 622
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	374
MlsI	TGGCCA	3 cut(s)	36, 162, 555
MluCI	AATT	9 cut(s)	78, 86, 229, 416, 471, 479, 613, 622, 876
MluNI	TGGCCA	3 cut(s)	36, 162, 555
MlyI	GAGTC	1 cut(s)	386
Mox20I	TGGCCA	3 cut(s)	36, 162, 555
MroNI	GCCGGC	2 cut(s)	97, 490
MscI	TGGCCA	3 cut(s)	36, 162, 555
MseI	TTAA	3 cut(s)	275, 668, 875
MslI	CAYNNNNRTG	2 cut(s)	711, 820
Msp20I	TGGCCA	3 cut(s)	36, 162, 555
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	5 cut(s)	98, 131, 491, 524, 750
MspR9I	CCNGG	2 cut(s)	849, 911
MunI	CAATTG	2 cut(s)	229, 622
Mva1269I	GAATGC	2 cut(s)	121, 514
MvaI	CCWGG	2 cut(s)	849, 911
NaeI	GCCGGC	2 cut(s)	99, 492
NcoI	CCATGG	2 cut(s)	70, 463
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	8 cut(s)	16, 108, 268, 352, 501, 661, 691, 700
NgoMIV	GCCGGC	2 cut(s)	97, 490
NlaIII	CATG	8 cut(s)	41, 74, 178, 312, 467, 571, 716, 811
NlaIV	GGNNCC	8 cut(s)	68, 102, 188, 371, 461, 495, 581, 824
NmuCI	GTSAC	3 cut(s)	299, 728, 886
NspI	RCATGY	1 cut(s)	312
OliI	CACNNNNGTG	1 cut(s)	820
PagI	TCATGA	1 cut(s)	807
PciI	ACATGT	1 cut(s)	308
PctI	GAATGC	2 cut(s)	121, 514
PdiI	GCCGGC	2 cut(s)	99, 492
PkrI	GCNGC	2 cut(s)	182, 328
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PscI	ACATGT	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	847, 909
PspFI	CCCAGC	2 cut(s)	235, 628
PspGI	CCWGG	2 cut(s)	847, 909
PspN4I	GGNNCC	8 cut(s)	68, 102, 188, 371, 461, 495, 581, 824
PspPI	GGNCC	3 cut(s)	67, 460, 761
PstI	CTGCAG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	3 cut(s)	447, 604, 845
RsaNI	GTAC	3 cut(s)	446, 603, 844
RseI	CAYNNNNRTG	2 cut(s)	711, 820
SaqAI	TTAA	3 cut(s)	275, 668, 875
SatI	GCNGC	2 cut(s)	181, 327
Sau3AI	GATC	8 cut(s)	16, 108, 268, 352, 501, 661, 691, 700
Sau96I	GGNCC	3 cut(s)	67, 460, 761
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	849, 911
SduI	GDGCHC	1 cut(s)	374
SfaNI	GCATC	1 cut(s)	801
SfcI	CTRYAG	4 cut(s)	181, 202, 574, 595
SinI	GGWCC	3 cut(s)	67, 460, 761
SmiMI	CAYNNNNRTG	2 cut(s)	711, 820
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	9 cut(s)	78, 86, 229, 416, 471, 479, 613, 622, 876
SsiI	CCGC	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	847, 909
StyI	CCWWGG	4 cut(s)	70, 191, 463, 584
TaaI	ACNGT	3 cut(s)	94, 361, 487
TaiI	ACGT	4 cut(s)	174, 301, 389, 567
TasI	AATT	9 cut(s)	78, 86, 229, 416, 471, 479, 613, 622, 876
TatI	WGTACW	1 cut(s)	445
Tru1I	TTAA	3 cut(s)	275, 668, 875
Tru9I	TTAA	3 cut(s)	275, 668, 875
TscAI	CASTG	3 cut(s)	727, 739, 822
TseFI	GTSAC	3 cut(s)	299, 728, 886
TseI	GCWGC	2 cut(s)	180, 326
Tsp45I	GTSAC	3 cut(s)	299, 728, 886
TspDTI	ATGAA	2 cut(s)	796, 825
TspGWI	ACGGA	1 cut(s)	716
TspRI	CASTG	3 cut(s)	727, 739, 822
VpaK11BI	GGWCC	3 cut(s)	67, 460, 761
XapI	RAATTY	3 cut(s)	78, 471, 613
XceI	RCATGY	1 cut(s)	312
ZraI	GACGTC	2 cut(s)	172, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.