Rh5AG538100
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
N/A
Physical Location & Seq
Forward (+)
92575215 .. 92576113
899 bp
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UTR
Exon/CDS
Intron
Rh5AG538100.1

Sequence Viewer

Length: 354 bp
ATGGAAGTTGTGCTTCCAGATTTGAAAATGTTCATGACATTTGACTACTGCCAATTTGTACTCTTTTCTTTCAAAAAAACAAAAATCGACAAAGGTGATGACTTTGTGGGTTTGTTTATGGATAGTGAACCTGATATAATTGATGGTGCGGATGCTGAAACAGGACATGTAATACGCACAACTGTTGGCGGTCGAGGTGGTCAATCTAGACAGATAGTGAGTTATATTTTAGAACATGTGGTTGGAACTGGCTCTTTTGGGGTTTTTTTCCAGGCGAAATGTAGAGAAACTGGAGAGATTGTTGCTATCAAGAAGGTTCTCCAAGACAAGCGTTACAAGAACCGGGAGTTATAG

Protein Analysis

117

Amino Acids

13.21

Weight (kDa)

6.1

Isoelectric Point (pI)

20.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 149, 189
AfaI GTAC 1 cut(s) 60
AflIII ACRYGT 2 cut(s) 166, 235
AgsI TTSAA 2 cut(s) 25, 73
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
Asp700I GAANNNNTTC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 107
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 1 cut(s) 344
BfaI CTAG 1 cut(s) 207
Bme1390I CCNGG 2 cut(s) 272, 344
BmrFI CCNGG 2 cut(s) 272, 344
BmsI GCATC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 344
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bse1I ACTGG 2 cut(s) 253, 295
BseBI CCWGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 253, 295
Bsh1285I CGRYCG 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 193
BsiSI CCGG 1 cut(s) 343
BspACI CCGC 2 cut(s) 149, 189
BspHI TCATGA 1 cut(s) 33
BsrI ACTGG 2 cut(s) 253, 295
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 184
BstF5I GGATG 1 cut(s) 157
BstMCI CGRYCG 1 cut(s) 193
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 2 cut(s) 170, 239
BstSCI CCNGG 2 cut(s) 270, 342
BtsCI GGATG 1 cut(s) 157
CciI TCATGA 1 cut(s) 33
Csp6I GTAC 1 cut(s) 59
CviAII CATG 3 cut(s) 34, 167, 236
CviJI RGCY 1 cut(s) 252
CviKI_1 RGCY 1 cut(s) 252
CviQI GTAC 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 270
FaeI CATG 3 cut(s) 37, 170, 239
FaiI YATR 7 cut(s) 35, 119, 137, 168, 225, 237, 352
FalI AAGNNNNNCTT 1 cut(s) 29
FatI CATG 3 cut(s) 33, 166, 235
FokI GGATG 1 cut(s) 164
FspBI CTAG 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 312
HapII CCGG 1 cut(s) 343
Hin1II CATG 3 cut(s) 37, 170, 239
HpaII CCGG 1 cut(s) 343
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 4 cut(s) 17, 34, 207, 310
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 1 cut(s) 184
Hsp92II CATG 3 cut(s) 37, 170, 239
LpnPI CCDG 7 cut(s) 30, 144, 147, 234, 257, 276, 284
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 332
MluCI AATT 2 cut(s) 53, 138
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 29
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 2 cut(s) 272, 344
MvaI CCWGG 1 cut(s) 272
NciI CCSGG 1 cut(s) 344
NlaIII CATG 3 cut(s) 37, 170, 239
NspI RCATGY 2 cut(s) 170, 239
PagI TCATGA 1 cut(s) 33
PciI ACATGT 2 cut(s) 166, 235
PdmI GAANNNNTTC 1 cut(s) 29
PscI ACATGT 2 cut(s) 166, 235
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 272, 344
SetI ASST 4 cut(s) 97, 133, 199, 318
SfaNI GCATC 1 cut(s) 142
Sse9I AATT 2 cut(s) 53, 138
SsiI CCGC 2 cut(s) 149, 189
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 270, 342
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 2 cut(s) 87, 193
TasI AATT 2 cut(s) 53, 138
TatI WGTACW 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 22
XbaI TCTAGA 1 cut(s) 206
XceI RCATGY 2 cut(s) 170, 239
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.