Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

92808654 .. 92810067

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG540200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCTCAAAGAGAAGAAGAAATTGCTCAACATCATTGATCCAAGACTAGAAGGAGAATATCCTATTAAAGGAGTGCACAAGGCTGCCATGCTGGTCTACCATTGCTTGAACAGGAACCCAAAGGCAAGGCCTCTGATGCGCGATATTGTAGATACTTTGGAGCCTCTGCAGACATCCACTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

61

Amino Acids

7.05

Weight (kDa)

9.52

Isoelectric Point (pI)

24.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	141
AclWI	GGATC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	78
Alw44I	GTGCAC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	1 cut(s)	128
ApaLI	GTGCAC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	116, 162
BmsI	GCATC	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	116, 162
BspMAI	CTGCAG	1 cut(s)	171
BspPI	GGATC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	100
BssMI	GATC	1 cut(s)	37
BstENI	CCTNNNNNAGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	173
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	167
BstSLI	GKGCMC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	173
CfoI	GCGC	1 cut(s)	141
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	3 cut(s)	83, 130, 163
CviKI_1	RGCY	3 cut(s)	83, 130, 163
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco147I	AGGCCT	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	91
FaiI	YATR	1 cut(s)	89
FatI	CATG	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	76, 97
Hpy188I	TCNGA	1 cut(s)	135
Hpy8I	GTNNAC	2 cut(s)	76, 97
HpyAV	CCTTC	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	76, 169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	2 cut(s)	77, 97
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	47
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	25, 28
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	20
MnlI	CCTC	2 cut(s)	141, 174
MseI	TTAA	1 cut(s)	66
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	116, 162
PceI	AGGCCT	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	116, 162
PstI	CTGCAG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	167
SgeI	CNNG	9 cut(s)	54, 59, 91, 100, 104, 118, 124, 138, 152
Sse9I	AATT	1 cut(s)	20
SseBI	AGGCCT	1 cut(s)	130
SspMI	CTAG	1 cut(s)	47
StuI	AGGCCT	1 cut(s)	130
TasI	AATT	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	1 cut(s)	83
VneI	GTGCAC	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.