Rh5BG082600

Cell division control protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
N/A
Physical Location & Seq
Forward (+)
7102160 .. 7104135
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG082600.1

Sequence Viewer

Length: 735 bp
ATGAACCCCCGCCCCAAAATACAAGATTACGAGATCAGTCCGGAGATTTTGAGGGTGGAATCCCATGACCAAGTGTACAAAGCCACGCACAAATTGACCGGCGAGTTAGTTACGATTAAAAAGGTGACGGCGGACGACGGCGTCGTACCTCCCACTCTCGTCCGCGAGATGTCTGTCTTGGGGAAGTTTACGAAATCGGCTTACGTCGTCAACTGCCGCGAAGTCATCCACGAGGTCGAGGACTACAAGCCCGTTTACTACGTTATTTACGACTACCTAGTAACCGATCTCCACAGCTACATCGCCGCCAAACCCTTACCGTCCGATGTGGTCAAGAATCTTCTCTTCAAGCTCCTCCAGGGAGTCGAAGAGTGTCACTCTAAAGGCGTCCGCCACCGGAACCTAAACCCTAGTAATCTGCTGGTGGACGAGGAACGAGGGTGTCTTAAAATTGGGGCCGGCATTGGTCAGTCCTTCGCTTTTTTTGGCGAGGCTTCTTCCATTCCCGGCGGGACGGTCAGTCTCTTTTACCAGGCTCCGGAGGCTTTGCTCCGATCAACCAAGTGCAGGGCTGCTGTTGACATGTGGGCTGTCGGCTGCATATTCGGTACTATTCAGTTGATGCTTTGCTATCTTGATGTCTATTTATGCACGAAAATGCTTACATATGATCCAGTTAAAAGAATTACAGCTAAAGCAGCAATGGAGCACCCCTACTTCAAGCCAACAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

244

Amino Acids

27.35

Weight (kDa)

7.59

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 24 - 203 2.7e-26 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 25 - 201 3.8e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AccII CGCG 2 cut(s) 165, 219
AccIII TCCGGA 2 cut(s) 40, 538
AciI CCGC 7 cut(s) 10, 131, 163, 217, 306, 391, 510
AclWI GGATC 1 cut(s) 665
AcyI GRCGYC 2 cut(s) 141, 387
AfaI GTAC 3 cut(s) 77, 147, 610
AfiI CCNNNNNNNGG 2 cut(s) 538, 567
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 2 cut(s) 349, 721
AhdI GACNNNNNGTC 1 cut(s) 519
AjnI CCWGG 2 cut(s) 357, 531
AluBI AGCT 3 cut(s) 297, 352, 692
AluI AGCT 3 cut(s) 297, 352, 692
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 1 cut(s) 527
AlwI GGATC 1 cut(s) 665
Aor13HI TCCGGA 2 cut(s) 40, 538
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 3 cut(s) 572, 597, 698
AspS9I GGNCC 1 cut(s) 456
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 136
BauI CACGAG 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 3 cut(s) 559, 584, 710
BceAI ACGGC 2 cut(s) 144, 154
BciT130I CCWGG 2 cut(s) 359, 533
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 2 cut(s) 278, 411
BisI GCNGC 5 cut(s) 217, 306, 573, 598, 699
BlsI GCNGC 5 cut(s) 218, 307, 574, 599, 700
Bme1390I CCNGG 3 cut(s) 359, 507, 533
BmeRI GACNNNNNGTC 1 cut(s) 519
BmgT120I GGNCC 1 cut(s) 456
BmiI GGNNCC 3 cut(s) 401, 457, 537
BmrFI CCNGG 3 cut(s) 359, 507, 533
BmsI GCATC 1 cut(s) 612
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BpmI CTGGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 507
BsaHI GRCGYC 2 cut(s) 141, 387
BsaJI CCNNGG 1 cut(s) 358
BsaWI WCCGGW 3 cut(s) 40, 396, 538
Bsc4I CCNNNNNNNGG 2 cut(s) 538, 567
Bse118I RCCGGY 2 cut(s) 98, 458
Bse1I ACTGG 1 cut(s) 674
Bse3DI GCAATG 1 cut(s) 708
BseAI TCCGGA 2 cut(s) 40, 538
BseBI CCWGG 2 cut(s) 359, 533
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 538, 567
BseMI GCAATG 1 cut(s) 708
BseNI ACTGG 1 cut(s) 674
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 3 cut(s) 559, 584, 710
BsgI GTGCAG 1 cut(s) 586
Bsh1236I CGCG 2 cut(s) 165, 219
BshFI GGCC 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 711
BsiSI CCGG 6 cut(s) 41, 99, 397, 459, 507, 539
BslFI GGGAC 1 cut(s) 526
BslI CCNNNNNNNGG 2 cut(s) 538, 567
BsmAI GTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 526
BsnI GGCC 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 711
Bsp13I TCCGGA 2 cut(s) 40, 538
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 4 cut(s) 33, 286, 554, 670
BspACI CCGC 7 cut(s) 10, 131, 163, 217, 306, 391, 510
BspANI GGCC 1 cut(s) 458
BspEI TCCGGA 2 cut(s) 40, 538
BspFNI CGCG 2 cut(s) 165, 219
BspLI GGNNCC 3 cut(s) 401, 457, 537
BspPI GGATC 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 708
BsrFI RCCGGY 2 cut(s) 98, 458
BsrGI TGTACA 1 cut(s) 75
BsrI ACTGG 1 cut(s) 674
BssAI RCCGGY 2 cut(s) 98, 458
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 4 cut(s) 33, 286, 554, 670
BssNI GRCGYC 2 cut(s) 141, 387
BssSI CACGAG 1 cut(s) 230
Bst2BI CACGAG 1 cut(s) 230
Bst2UI CCWGG 2 cut(s) 359, 533
Bst4CI ACNGT 2 cut(s) 321, 517
Bst6I CTCTTC 2 cut(s) 350, 363
BstACI GRCGYC 2 cut(s) 141, 387
BstAUI TGTACA 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 460
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 2 cut(s) 165, 219
BstKTI GATC 4 cut(s) 36, 289, 557, 673
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 4 cut(s) 33, 286, 554, 670
BstMWI GCNNNNNNNGC 2 cut(s) 542, 698
BstNI CCWGG 2 cut(s) 359, 533
BstNSI RCATGY 1 cut(s) 586
BstSCI CCNGG 3 cut(s) 357, 505, 531
BstUI CGCG 2 cut(s) 165, 219
BstV1I GCAGC 3 cut(s) 559, 584, 710
BsuRI GGCC 1 cut(s) 458
BtgZI GCGATG 1 cut(s) 286
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 460
Cfr10I RCCGGY 2 cut(s) 98, 458
Cfr13I GGNCC 1 cut(s) 456
CseI GACGC 2 cut(s) 130, 376
Csp6I GTAC 3 cut(s) 76, 146, 609
CviAII CATG 3 cut(s) 65, 583, 732
CviQI GTAC 3 cut(s) 76, 146, 609
DpnI GATC 4 cut(s) 35, 288, 556, 672
DpnII GATC 4 cut(s) 33, 286, 554, 670
DrdI GACNNNNNNGTC 1 cut(s) 140
DriI GACNNNNNGTC 1 cut(s) 519
DseDI GACNNNNNNGTC 1 cut(s) 140
Eam1104I CTCTTC 2 cut(s) 350, 363
Eam1105I GACNNNNNGTC 1 cut(s) 519
EarI CTCTTC 2 cut(s) 350, 363
EciI GGCGGA 2 cut(s) 146, 380
EcoRII CCWGG 2 cut(s) 357, 531
FaeI CATG 3 cut(s) 68, 586, 735
FaiI YATR 7 cut(s) 66, 584, 602, 649, 667, 669, 733
FaqI GGGAC 1 cut(s) 526
FatI CATG 3 cut(s) 64, 582, 731
FauI CCCGC 2 cut(s) 17, 503
FauNDI CATATG 1 cut(s) 667
Fnu4HI GCNGC 5 cut(s) 217, 306, 573, 598, 699
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 5 cut(s) 217, 306, 573, 598, 699
FspBI CTAG 2 cut(s) 278, 411
GluI GCNGC 5 cut(s) 217, 306, 573, 598, 699
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 1 cut(s) 458
HapII CCGG 6 cut(s) 41, 99, 397, 459, 507, 539
HgaI GACGC 2 cut(s) 130, 376
Hin1I GRCGYC 2 cut(s) 141, 387
Hin1II CATG 3 cut(s) 68, 586, 735
HincII GTYRAC 2 cut(s) 211, 580
HindII GTYRAC 2 cut(s) 211, 580
HinfI GANTC 3 cut(s) 59, 337, 363
HpaII CCGG 6 cut(s) 41, 99, 397, 459, 507, 539
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 6 cut(s) 76, 189, 211, 256, 427, 580
Hpy188I TCNGA 2 cut(s) 325, 554
Hpy188III TCNNGA 4 cut(s) 41, 334, 539, 635
Hpy8I GTNNAC 6 cut(s) 76, 189, 211, 256, 427, 580
Hpy99I CGWCG 3 cut(s) 140, 146, 209
HpyAV CCTTC 1 cut(s) 484
HpyCH4III ACNGT 2 cut(s) 321, 517
HpyCH4IV ACGT 2 cut(s) 204, 261
HpyCH4V TGCA 3 cut(s) 567, 600, 651
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 698
HpySE526I ACGT 2 cut(s) 204, 261
Hsp92I GRCGYC 2 cut(s) 141, 387
Hsp92II CATG 3 cut(s) 68, 586, 735
Kpn2I TCCGGA 2 cut(s) 40, 538
KroI GCCGGC 1 cut(s) 458
KroNI GCCGGC 1 cut(s) 460
Kzo9I GATC 4 cut(s) 33, 286, 554, 670
LmnI GCTCC 4 cut(s) 357, 541, 555, 706
Lsp1109I GCAGC 3 cut(s) 559, 584, 710
LweI GCATC 1 cut(s) 612
MaeI CTAG 2 cut(s) 278, 411
MaeII ACGT 2 cut(s) 204, 261
MaeIII GTNAC 4 cut(s) 109, 124, 280, 374
MalI GATC 4 cut(s) 35, 288, 556, 672
MboI GATC 4 cut(s) 33, 286, 554, 670
MboII GAAGA 4 cut(s) 332, 337, 380, 489
MhlI GDGCHC 1 cut(s) 711
MluCI AATT 3 cut(s) 92, 450, 684
MlyI GAGTC 1 cut(s) 372
MnlI CCTC 9 cut(s) 45, 159, 226, 232, 365, 424, 431, 484, 535
MroI TCCGGA 2 cut(s) 40, 538
MroNI GCCGGC 1 cut(s) 458
MseI TTAA 3 cut(s) 117, 447, 678
MslI CAYNNNNRTG 1 cut(s) 656
MspI CCGG 6 cut(s) 41, 99, 397, 459, 507, 539
MspR9I CCNGG 3 cut(s) 359, 507, 533
MvaI CCWGG 2 cut(s) 359, 533
MvnI CGCG 2 cut(s) 165, 219
MwoI GCNNNNNNNGC 2 cut(s) 542, 698
NaeI GCCGGC 1 cut(s) 460
NciI CCSGG 1 cut(s) 507
NdeI CATATG 1 cut(s) 667
NdeII GATC 4 cut(s) 33, 286, 554, 670
NgoMIV GCCGGC 1 cut(s) 458
NlaIII CATG 3 cut(s) 68, 586, 735
NlaIV GGNNCC 3 cut(s) 401, 457, 537
NmuCI GTSAC 2 cut(s) 124, 374
NspI RCATGY 1 cut(s) 586
PciI ACATGT 1 cut(s) 582
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 267
PdiI GCCGGC 1 cut(s) 460
PfeI GAWTC 2 cut(s) 59, 337
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 5 cut(s) 218, 307, 574, 599, 700
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PscI ACATGT 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 357, 531
PspGI CCWGG 2 cut(s) 357, 531
PspN4I GGNNCC 3 cut(s) 401, 457, 537
PspPI GGNCC 1 cut(s) 456
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 3 cut(s) 77, 147, 610
RsaNI GTAC 3 cut(s) 76, 146, 609
RseI CAYNNNNRTG 1 cut(s) 656
SaqAI TTAA 3 cut(s) 117, 447, 678
SatI GCNGC 5 cut(s) 217, 306, 573, 598, 699
Sau3AI GATC 4 cut(s) 33, 286, 554, 670
Sau96I GGNCC 1 cut(s) 456
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 3 cut(s) 359, 507, 533
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 656
Sse9I AATT 3 cut(s) 92, 450, 684
SsiI CCGC 7 cut(s) 10, 131, 163, 217, 306, 391, 510
SspMI CTAG 2 cut(s) 278, 411
StyD4I CCNGG 3 cut(s) 357, 505, 531
TaaI ACNGT 2 cut(s) 321, 517
TaiI ACGT 2 cut(s) 207, 264
TaqI TCGA 2 cut(s) 237, 366
TasI AATT 3 cut(s) 92, 450, 684
TatI WGTACW 1 cut(s) 75
TauI GCSGC 2 cut(s) 219, 308
TfiI GAWTC 2 cut(s) 59, 337
Tru1I TTAA 3 cut(s) 117, 447, 678
Tru9I TTAA 3 cut(s) 117, 447, 678
TseFI GTSAC 2 cut(s) 124, 374
TseI GCWGC 3 cut(s) 572, 597, 698
Tsp45I GTSAC 2 cut(s) 124, 374
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 140
XceI RCATGY 1 cut(s) 586
XspI CTAG 2 cut(s) 278, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.