Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

12957072 .. 12957368

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG131200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAGCAGGAAGAGCCAGGCGAAGAAGGTGGTATGTATTCCAGCGCCAGCAGCAGCAAACAGTAGGCCAACTGGAGAAGTAGTTCCATCTGATCTGTGGGCATGGAGAAAGTACGGTCAGAAACCCATCAAAGGTTCACCTTATCCAAGGTTAGTTTCAGTCAGTCTCTTACTTACTACGCTCTTGTCATCGTCATTTTCGATGATATACAGAAAGTTCCTAGAACTAAGGCTAAGGCTGCCATTTGCATATTTCACTGACAACCATGGAAGTGCATGTTGTGTCCCTTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

98

Amino Acids

10.92

Weight (kDa)

10.1

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	31 - 50	2.3e-06	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	2 cut(s)	139, 171
AloI	GAACNNNNNNTCC	2 cut(s)	66, 98
Alw26I	GTCTC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	3 cut(s)	50, 53, 238
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	62, 65, 225
BccI	CCATC	2 cut(s)	94, 134
BciT130I	CCWGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	47
BisI	GCNGC	3 cut(s)	51, 54, 239
BlsI	GCNGC	3 cut(s)	52, 55, 240
Bme1390I	CCNGG	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	146, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	146, 265
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	3 cut(s)	62, 65, 225
BshFI	GGCC	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	91
Bsp19I	CCATGG	1 cut(s)	265
BspANI	GGCC	1 cut(s)	67
BspQI	GCTCTTC	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	146, 265
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	2 cut(s)	146, 265
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	62, 116
Bst6I	CTCTTC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	227, 233
BstDSI	CCRYGG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 50, 238
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	62, 65, 225
BsuRI	GGCC	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	3 cut(s)	102, 266, 276
CviJI	RGCY	4 cut(s)	15, 67, 232, 238
CviKI_1	RGCY	4 cut(s)	15, 67, 232, 238
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	2 cut(s)	227, 233
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco130I	CCWWGG	2 cut(s)	146, 265
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	146, 265
ErhI	CCWWGG	2 cut(s)	146, 265
FaeI	CATG	3 cut(s)	105, 269, 279
FaiI	YATR	6 cut(s)	34, 103, 208, 250, 267, 277
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	3 cut(s)	101, 265, 275
Fnu4HI	GCNGC	3 cut(s)	51, 54, 239
Fsp4HI	GCNGC	3 cut(s)	51, 54, 239
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	3 cut(s)	51, 54, 239
GsuI	CTGGAG	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	105, 269, 279
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	91, 120
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	62, 116
HpyCH4V	TGCA	2 cut(s)	248, 275
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 50, 238
HpyF3I	CTNAG	2 cut(s)	227, 233
Hsp92II	CATG	3 cut(s)	105, 269, 279
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	91
LguI	GCTCTTC	1 cut(s)	5
LpnPI	CCDG	5 cut(s)	2, 29, 54, 57, 60
Lsp1109I	GCAGC	3 cut(s)	62, 65, 225
MaeI	CTAG	1 cut(s)	221
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	22, 34
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	1 cut(s)	295
MslI	CAYNNNNRTG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	12, 50, 238
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	3 cut(s)	105, 269, 279
NspI	RCATGY	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	52, 55, 240
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	295
SatI	GCNGC	3 cut(s)	51, 54, 239
Sau3AI	GATC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	4 cut(s)	30, 136, 142, 152
SmiMI	CAYNNNNRTG	1 cut(s)	270
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	146, 265
TaaI	ACNGT	2 cut(s)	62, 116
TaqI	TCGA	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	295
Tru9I	TTAA	1 cut(s)	295
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	3 cut(s)	50, 53, 238
TspRI	CASTG	1 cut(s)	262
XceI	RCATGY	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.