Rh5BG136200

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
N/A
Physical Location & Seq
Forward (+)
13548122 .. 13580267
32146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG136200.1

Sequence Viewer

Length: 456 bp
ATGCCAAATCACTCTCTAACTCTATTGATTGAGCTAGCGAAGAGAGTTTATGCTCTAGACAAAAGAGGAAGGTTTCCAGAAGAGCTTCTGGCTTTGAAATATCTGAACTTTTTGAAAATAGATCAGAACTTTTTCACAGGTCCCTTACCCGCATGGATTGGCAATATGTCTGCACTCACGTTGTTGTCAATTGCCCACAATGCATTCTCTGGGCCGATCCCCAAGGAACTCGGAAATCTGAAGGACCTAATTATGCTGTCCTTTGGATCAAATAATTTCTCTGGAGCACTCCCTCCAGAACTTGGTAATCTAATCAAGCTCCAGCAACTAGTTCTACGAAATGCATTGATTACTGGTAGCCTCCCTCCTGATATTGCAGAATATCCAAATTTACAGATACTGTGTAGACATGACATCGATGAAGAAGAGACACTTTTAGACAGGTTTGTTAAGTGA

Protein Analysis

151

Amino Acids

16.91

Weight (kDa)

5.89

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 302
AccI GTMKAC 1 cut(s) 406
AciI CCGC 1 cut(s) 150
AclWI GGATC 2 cut(s) 211, 274
AcsI RAATTY 1 cut(s) 388
AcuI CTGAAG 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 2 cut(s) 97, 115
AhlI ACTAGT 1 cut(s) 328
AluBI AGCT 3 cut(s) 34, 85, 319
AluI AGCT 3 cut(s) 34, 85, 319
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 2 cut(s) 211, 274
AlwNI CAGNNNCTG 1 cut(s) 400
AoxI GGCC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 388
Asp700I GAANNNNTTC 2 cut(s) 84, 131
AspS9I GGNCC 3 cut(s) 140, 212, 244
AsuNHI GCTAGC 1 cut(s) 34
AvaII GGWCC 2 cut(s) 140, 244
Bbv12I GWGCWC 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 422
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 3 cut(s) 35, 56, 329
Bme18I GGWCC 2 cut(s) 140, 244
BmgT120I GGNCC 3 cut(s) 140, 212, 244
BmiI GGNNCC 1 cut(s) 142
BmtI GCTAGC 1 cut(s) 38
BpmI CTGGAG 3 cut(s) 279, 303, 305
Bsa29I ATCGAT 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 358
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 156
BshFI GGCC 1 cut(s) 214
BshVI ATCGAT 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 289
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 3 cut(s) 121, 216, 266
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 214
BspDI ATCGAT 1 cut(s) 417
BspLI GGNNCC 1 cut(s) 142
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 2 cut(s) 211, 274
BspQI GCTCTTC 1 cut(s) 75
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 121, 216, 266
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 402
Bst6I CTCTTC 3 cut(s) 35, 75, 420
BstC8I GCNNGC 1 cut(s) 36
BstKTI GATC 3 cut(s) 124, 219, 269
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 3 cut(s) 121, 216, 266
BstMWI GCNNNNNNNGC 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 417
BsuRI GGCC 1 cut(s) 214
BsuTUI ATCGAT 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 36
CaiI CAGNNNCTG 1 cut(s) 400
Cfr13I GGNCC 3 cut(s) 140, 212, 244
ClaI ATCGAT 1 cut(s) 417
CviAII CATG 2 cut(s) 153, 410
CviJI RGCY 6 cut(s) 34, 85, 92, 214, 319, 360
CviKI_1 RGCY 6 cut(s) 34, 85, 92, 214, 319, 360
DpnI GATC 3 cut(s) 123, 218, 268
DpnII GATC 3 cut(s) 121, 216, 266
Eam1104I CTCTTC 3 cut(s) 35, 75, 420
EarI CTCTTC 3 cut(s) 35, 75, 420
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 140, 244
Eco57I CTGAAG 1 cut(s) 260
EcoO109I RGGNCCY 2 cut(s) 140, 244
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 2 cut(s) 205, 346
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 156, 413
FaiI YATR 5 cut(s) 51, 154, 167, 254, 411
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 126
FatI CATG 2 cut(s) 152, 409
FauI CCCGC 1 cut(s) 157
FblI GTMKAC 1 cut(s) 406
FspBI CTAG 3 cut(s) 35, 56, 329
GsuI CTGGAG 3 cut(s) 279, 303, 305
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 2 cut(s) 156, 413
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 4 cut(s) 105, 126, 233, 240
Hpy188III TCNNGA 5 cut(s) 56, 77, 282, 296, 368
Hpy8I GTNNAC 1 cut(s) 407
HpyAV CCTTC 2 cut(s) 63, 235
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 4 cut(s) 173, 203, 344, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 2 cut(s) 156, 413
Kzo9I GATC 3 cut(s) 121, 216, 266
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 2 cut(s) 284, 324
MaeI CTAG 3 cut(s) 35, 56, 329
MaeII ACGT 1 cut(s) 179
MalI GATC 3 cut(s) 123, 218, 268
MboI GATC 3 cut(s) 121, 216, 266
MboII GAAGA 4 cut(s) 52, 92, 434, 437
MfeI CAATTG 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 4 cut(s) 189, 249, 274, 388
MnlI CCTC 4 cut(s) 59, 303, 371, 375
Mph1103I ATGCAT 2 cut(s) 205, 346
MroXI GAANNNNTTC 2 cut(s) 84, 131
MseI TTAA 1 cut(s) 450
MunI CAATTG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 3 cut(s) 121, 216, 266
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 2 cut(s) 156, 413
NlaIV GGNNCC 1 cut(s) 142
NsiI ATGCAT 2 cut(s) 205, 346
PciSI GCTCTTC 1 cut(s) 75
PctI GAATGC 1 cut(s) 203
PdmI GAANNNNTTC 2 cut(s) 84, 131
PflMI CCANNNNNTGG 1 cut(s) 302
PpuMI RGGWCCY 2 cut(s) 140, 244
Psp5II RGGWCCY 2 cut(s) 140, 244
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 3 cut(s) 140, 212, 244
PspPPI RGGWCCY 2 cut(s) 140, 244
PstNI CAGNNNCTG 1 cut(s) 400
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 450
Sau3AI GATC 3 cut(s) 121, 216, 266
Sau96I GGNCC 3 cut(s) 140, 212, 244
SduI GDGCHC 1 cut(s) 289
SetI ASST 8 cut(s) 36, 74, 87, 142, 182, 249, 321, 446
SinI GGWCC 2 cut(s) 140, 244
SpeI ACTAGT 1 cut(s) 328
Sse9I AATT 4 cut(s) 189, 249, 274, 388
SsiI CCGC 1 cut(s) 150
SspMI CTAG 3 cut(s) 35, 56, 329
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 402
TaiI ACGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 417
TasI AATT 4 cut(s) 189, 249, 274, 388
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TspDTI ATGAA 1 cut(s) 435
Van91I CCANNNNNTGG 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 140, 244
XapI RAATTY 1 cut(s) 388
XbaI TCTAGA 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 406
XmnI GAANNNNTTC 2 cut(s) 84, 131
XspI CTAG 3 cut(s) 35, 56, 329
Zsp2I ATGCAT 2 cut(s) 205, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.