Rh5BG144200

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
N/A
Physical Location & Seq
Reverse (-)
14956248 .. 14956523
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG144200.1

Sequence Viewer

Length: 276 bp
ATGCTTGCCACAGTAGAAGCCAGCACAAGTACATTTCAGTCCATCAAAGACGGGGAGACCATAGTTTCAACCGATGGAACCTTTGAGCTCGGATTTTTCACTCCTGCAGGCGCTTCTGGTAATCGATACGTAGGCATATGGGCCAACTTTCCCGCGCTTTTTGCAAGCTTGGATAGGTGGATTACATATCTTGGGCCTCAGTTGGGCCACGATATAATATTTAGGCCCGAACCATCAGCATGTCTTGTGGTGGATCTTGGACTTGCCATTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

91

Amino Acids

9.75

Weight (kDa)

4.35

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 155
AciI CCGC 1 cut(s) 153
AclWI GGATC 1 cut(s) 261
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 69
AluBI AGCT 2 cut(s) 88, 168
AluI AGCT 2 cut(s) 88, 168
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 261
AoxI GGCC 4 cut(s) 141, 194, 205, 224
AspLEI GCGC 2 cut(s) 113, 157
AspS9I GGNCC 4 cut(s) 141, 194, 205, 225
BanII GRGCYC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 90
BccI CCATC 3 cut(s) 50, 68, 241
BcoDI GTCTC 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 114
BmgT120I GGNCC 4 cut(s) 141, 194, 205, 225
BmiI GGNNCC 1 cut(s) 79
Bsa29I ATCGAT 1 cut(s) 124
BsaAI YACGTR 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseCI ATCGAT 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 4 cut(s) 143, 196, 207, 226
BshVI ATCGAT 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 4 cut(s) 143, 196, 207, 226
Bso31I GGTCTC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 1 cut(s) 153
BspANI GGCC 4 cut(s) 143, 196, 207, 226
BspCNI CTCAG 1 cut(s) 211
BspDI ATCGAT 1 cut(s) 124
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 50
BssMI GATC 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 130
BstC8I GCNNGC 4 cut(s) 6, 22, 109, 166
BstDEI CTNAG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 2 cut(s) 113, 157
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 105
BstSNI TACGTA 1 cut(s) 130
BstUI CGCG 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
Bsu15I ATCGAT 1 cut(s) 124
BsuRI GGCC 4 cut(s) 143, 196, 207, 226
BsuTUI ATCGAT 1 cut(s) 124
Cac8I GCNNGC 4 cut(s) 6, 22, 109, 166
CfoI GCGC 2 cut(s) 113, 157
Cfr13I GGNCC 4 cut(s) 141, 194, 205, 225
ClaI ATCGAT 1 cut(s) 124
Csp6I GTAC 1 cut(s) 30
CviAII CATG 1 cut(s) 240
CviJI RGCY 7 cut(s) 20, 88, 143, 168, 196, 207, 226
CviKI_1 RGCY 7 cut(s) 20, 88, 143, 168, 196, 207, 226
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Ecl136II GAGCTC 1 cut(s) 88
Eco105I TACGTA 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 1 cut(s) 243
FaiI YATR 6 cut(s) 62, 137, 139, 187, 215, 241
FatI CATG 1 cut(s) 239
FauI CCCGC 1 cut(s) 160
FauNDI CATATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 90
GlaI GCGC 2 cut(s) 112, 156
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 4 cut(s) 143, 196, 207, 226
HhaI GCGC 2 cut(s) 113, 157
Hin1II CATG 1 cut(s) 243
Hin6I GCGC 2 cut(s) 111, 155
HinP1I GCGC 2 cut(s) 111, 155
HindIII AAGCTT 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 107, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 243
HspAI GCGC 2 cut(s) 111, 155
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 4 cut(s) 34, 93, 102, 117
MaeII ACGT 1 cut(s) 129
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 90
MnlI CCTC 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 238
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeI CATATG 1 cut(s) 137
NdeII GATC 1 cut(s) 253
NlaIII CATG 1 cut(s) 243
NlaIV GGNNCC 1 cut(s) 79
NspI RCATGY 1 cut(s) 243
Ppu21I YACGTR 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 4 cut(s) 141, 194, 205, 225
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 238
SacI GAGCTC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 4 cut(s) 141, 194, 205, 225
SbfI CCTGCAGG 1 cut(s) 109
SdaI CCTGCAGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 90
SetI ASST 5 cut(s) 83, 90, 132, 170, 179
SfcI CTRYAG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 238
SnaBI TACGTA 1 cut(s) 130
Sse8387I CCTGCAGG 1 cut(s) 109
SsiI CCGC 1 cut(s) 153
SspI AATATT 1 cut(s) 219
SstI GAGCTC 1 cut(s) 90
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 124
TatI WGTACW 1 cut(s) 29
XceI RCATGY 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.