Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17518750 .. 17524706

Gene Structure 5957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG166400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTGGTGCAAGTTGGGGCGGATGAATGTGAGTATCAAAGTATCACGATTGCTACGCCACTTGCCAACAGGAAGGTTTTGAGCGCGGCTCATGCAAAGGCTTTCTCCTTCGTCATTGTATCTGCAGTAAGACTTGTGAAGCACCTGGAGGTCCTCCTACATACCAACCTCCTCCACCTCCCAGCTCCCAATAGACTACTGGATATAATGGACAGGGGCACCGATGCCAGCAACGTTTTGCTCGGGAAAGTTGTTCCCCTTAAGCTCGGTTATGTTGGTGTTGTCAACCGTTGTCAGGAGGTACAAATCATTCAAATAGTTAATCTGTCTACCACTAGTTTTATTTGCTACGTCGCTACAAAATTTATTCCCTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

126

Amino Acids

13.84

Weight (kDa)

8.51

Isoelectric Point (pI)

12.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	75 - 100	3.6e-06	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	329
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	20, 86
AclI	AACGTT	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	362
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	295
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	314
AhlI	ACTAGT	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	2 cut(s)	185, 265
AluI	AGCT	2 cut(s)	185, 265
Ama87I	CYCGRG	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	260
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	295
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	221
BspACI	CCGC	2 cut(s)	20, 86
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	218
BspTI	CTTAAG	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	290
BstAFI	CTTAAG	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	28
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	4 cut(s)	89, 101, 185, 265
CviKI_1	RGCY	4 cut(s)	89, 101, 185, 265
CviQI	GTAC	1 cut(s)	302
EciI	GGCGGA	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	95
FaiI	YATR	5 cut(s)	93, 162, 206, 273, 375
FatI	CATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	87
GsaI	CCCAGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	167
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	286, 330
Hpy188III	TCNNGA	3 cut(s)	46, 244, 296
Hpy8I	GTNNAC	2 cut(s)	286, 330
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	67, 118
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	2 cut(s)	234, 351
HpyCH4V	TGCA	3 cut(s)	10, 95, 125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpySE526I	ACGT	2 cut(s)	234, 351
Hsp92II	CATG	1 cut(s)	95
HspAI	GCGC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	8 cut(s)	55, 131, 158, 185, 195, 199, 241, 281
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	2 cut(s)	234, 351
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	1 cut(s)	362
MnlI	CCTC	6 cut(s)	142, 164, 179, 182, 188, 292
MseI	TTAA	2 cut(s)	261, 321
MspCI	CTTAAG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	151
Psp1406I	AACGTT	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	151
PspPPI	RGGWCCY	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	127
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	261, 321
SatI	GCNGC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	2 cut(s)	20, 86
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	2 cut(s)	237, 354
TasI	AATT	1 cut(s)	362
TauI	GCSGC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	261, 321
Tru9I	TTAA	2 cut(s)	261, 321
TspDTI	ATGAA	1 cut(s)	39
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	329
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.