Rh5BG196700

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
N/A
Physical Location & Seq
Reverse (-)
21853106 .. 21860212
7107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG196700.1

Sequence Viewer

Length: 294 bp
ATGATGAAGCACAGAATCTGCATTACTGGACAATATCTATCTGGACAATATATATGGAAAAGTATGTTGTCTGATCTACCAAAGCGTTTTTGTCTGCCACGTTTTGATGACTTGCAGCAATTGACGATTCATGATTGCTATATCTGGAGATTCCTCTTCGACCTACTCAAAACATCACCTAATCTGGAATTTCTTGACATCGAATATATGAAACGGAGGCATTACGTACACAAGGAACTTTTGATCGACCAAATGGGTTTAAAAACTGTCGATTTGAATTTATACAACGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

11.83

Weight (kDa)

8.46

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 188, 277
AfaI GTAC 1 cut(s) 228
AgsI TTSAA 1 cut(s) 277
AlwNI CAGNNNCTG 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 2 cut(s) 188, 277
AsuHPI GGTGA 1 cut(s) 168
BbvI GCAGC 1 cut(s) 127
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 166
BsaAI YACGTR 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 73, 243
BspHI TCATGA 1 cut(s) 130
BsrI ACTGG 1 cut(s) 31
BssMI GATC 2 cut(s) 73, 243
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 226
BstKTI GATC 2 cut(s) 76, 246
BstMBI GATC 2 cut(s) 73, 243
BstSNI TACGTA 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 18
CciI TCATGA 1 cut(s) 130
Csp6I GTAC 1 cut(s) 227
CviAII CATG 1 cut(s) 131
CviQI GTAC 1 cut(s) 227
DpnI GATC 2 cut(s) 75, 245
DpnII GATC 2 cut(s) 73, 243
DraI TTTAAA 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco105I TACGTA 1 cut(s) 226
FaeI CATG 1 cut(s) 134
FaiI YATR 9 cut(s) 51, 53, 55, 65, 132, 141, 207, 209, 283
FatI CATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 166
Hin1II CATG 1 cut(s) 134
HinfI GANTC 3 cut(s) 15, 127, 150
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 5 cut(s) 42, 131, 145, 185, 194
Hpy8I GTNNAC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 2 cut(s) 100, 225
HpyCH4V TGCA 2 cut(s) 21, 115
HpySE526I ACGT 2 cut(s) 100, 225
Hsp92II CATG 1 cut(s) 134
Kzo9I GATC 2 cut(s) 73, 243
LpnPI CCDG 4 cut(s) 12, 27, 130, 170
Lsp1109I GCAGC 1 cut(s) 127
MaeII ACGT 2 cut(s) 100, 225
MalI GATC 2 cut(s) 75, 245
MboI GATC 2 cut(s) 73, 243
MboII GAAGA 1 cut(s) 148
MfeI CAATTG 1 cut(s) 119
MluCI AATT 3 cut(s) 119, 188, 277
MnlI CCTC 2 cut(s) 164, 210
MseI TTAA 1 cut(s) 260
MunI CAATTG 1 cut(s) 119
NdeII GATC 2 cut(s) 73, 243
NlaIII CATG 1 cut(s) 134
PagI TCATGA 1 cut(s) 130
PfeI GAWTC 3 cut(s) 15, 127, 150
PkrI GCNGC 1 cut(s) 117
Ppu21I YACGTR 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 18
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 2 cut(s) 73, 243
SetI ASST 4 cut(s) 103, 165, 181, 228
SgeI CNNG 9 cut(s) 39, 54, 111, 124, 143, 157, 197, 206, 244
SnaBI TACGTA 1 cut(s) 226
Sse9I AATT 3 cut(s) 119, 188, 277
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 2 cut(s) 103, 228
TaqI TCGA 4 cut(s) 159, 201, 246, 270
TasI AATT 3 cut(s) 119, 188, 277
TfiI GAWTC 3 cut(s) 15, 127, 150
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 3 cut(s) 20, 119, 224
TspGWI ACGGA 1 cut(s) 229
XapI RAATTY 2 cut(s) 188, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.