Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

27416336 .. 27494334

Gene Structure 77999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG232200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGCTCGGATCAAAGGCTTGCAGTATATCATACAACATGAGAGCATTCCAGTGTCTGAGGAGAAGAAAATCCTTAAAGAGATCAAACAACTTGAAAACAGTCATTGCTAATGCTGTTGTACTAGCCAAGATTCAGGAATCAGTGGTTCATATGGACAAAGAGGCCCTTCAAGACCTGGTTAAACTTATAGGTGGTGATTTGGATGGAGTAAGGAAAGAGCAACAAGCAGTTTGGTCCAAAATTCAGCAACTTTATGATGCAATTAAGGCCGTAGATAAGCAAATTTCATCAATATGGGATGAGCTGAAGATTGTAACTGATAAGAGGGATCAAGCACAACAGAGCATTTTTACATTTAGGCAGCAGCTTTATCAGCAAAATGCCTCCTTTTACCTAAGCCGTAATATCTTGAACAAAGCAAGAGGTTTGGCTATCAAGAATGATGTTATAGCACTTGGAAAGCTTACTCATGCAGATGAGCGTGAAAAGAAGGCAAAGAAGAAGGCTACATTGGCAACTGATAGCAATCCTGATGAGGCAACGGAACCAATTGCTGAAGTTGCAGAACCAGAAAAGGTTAATGAAAATGTTGAAGTTCTGGTCCCTGCTAAGGAGAAGGTGCAAAAGGATAAAACTATCAGGAATAAGGGTCGTCCAAGAGGTCCAGACTCACTTCCGAAAGCCATCCTGAAGCGGAAGAAGACCGATTCAGAATTAAATATTTCAGCTCCAGCTCCAGCTCCAGCTCCAGTTACTATACTTCCACCTAAGCAAGGAAAGAAGAGTAACACAAAAAGAAATATCATCATAACAATTGAGGTTGTGATTGTTTTTGTCACGATGCTTCTCGGTGGCATATGCATTTTCTTAAGAGTCAAGAAGTCAAGGGTAAAACTTGACGATGATTTTTCTGAAGAAATTAGCCTCGTGGAATCGTTACAATATAACTTTGAAGATATTAAATCTGCAACGGATGACTTTTCTGATGAAAATAAGCTTGGACAAGGTGGATTTGGAGCTGTTTACAAGGGTAGGCTATATAACGGACAATATATAGCTGTGAAAAGGCTATCTAAAAGTTCTCAACAGGGTGAACGTGAATTTAAAAATGAAGTCACGTTAGTTGCTCAACTTCAACACCGGAACTTAGTGAGGCTTTTAGGCTTTTGCTTGAAAGGAGAAGAAAGGCTCCTCATTTACGAATATATACCTAATAAAAGTCTTGATCACTTCATTTTTGGTATGGTATCCTCTAGATCCTCCGTATATATATTTCATAGTTATAATTTCTTCAGATTTTATATATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

436

Amino Acids

49.5

Weight (kDa)

9.6

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	328 - 412	1.1e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	330 - 412	4.4e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1284
AciI	CCGC	1 cut(s)	694
AclWI	GGATC	3 cut(s)	16, 336, 1251
AcsI	RAATTY	3 cut(s)	240, 282, 1100
AcuI	CTGAAG	5 cut(s)	326, 576, 710, 933, 1276
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	610, 773
AflII	CTTAAG	1 cut(s)	868
AgsI	TTSAA	7 cut(s)	94, 170, 412, 593, 953, 1136, 1174
AjnI	CCWGG	1 cut(s)	174
AjuI	GAANNNNNNNTTGG	4 cut(s)	494, 526, 981, 1013
AlwI	GGATC	3 cut(s)	16, 336, 1251
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	2 cut(s)	162, 267
ApeKI	GCWGC	2 cut(s)	361, 364
ApoI	RAATTY	3 cut(s)	240, 282, 1100
AspS9I	GGNCC	4 cut(s)	163, 234, 601, 662
AsuHPI	GGTGA	2 cut(s)	206, 1103
AvaII	GGWCC	3 cut(s)	234, 601, 662
BauI	CACGAG	1 cut(s)	926
BbsI	GAAGAC	1 cut(s)	707
BbvI	GCAGC	2 cut(s)	373, 376
BccI	CCATC	2 cut(s)	197, 692
BceAI	ACGGC	2 cut(s)	254, 384
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	1258
BclI	TGATCA	1 cut(s)	1225
BfaI	CTAG	2 cut(s)	122, 1254
BfrI	CTTAAG	1 cut(s)	868
BfuI	GTATCC	1 cut(s)	1258
BisI	GCNGC	2 cut(s)	362, 365
BlsI	GCNGC	2 cut(s)	363, 366
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	3 cut(s)	234, 601, 662
BmgT120I	GGNCC	4 cut(s)	163, 234, 601, 662
BmiI	GGNNCC	3 cut(s)	546, 603, 1190
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	2 cut(s)	247, 831
BpiI	GAAGAC	1 cut(s)	707
BpmI	CTGGAG	4 cut(s)	714, 720, 726, 732
Bpu10I	CCTNAGC	3 cut(s)	395, 609, 768
BsaBI	GATNNNNATC	1 cut(s)	525
BsaWI	WCCGGW	1 cut(s)	1140
Bsc4I	CCNNNNNNNGG	2 cut(s)	610, 773
Bse1I	ACTGG	2 cut(s)	49, 749
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	176
BseGI	GGATG	4 cut(s)	208, 304, 684, 979
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	610, 773
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	2 cut(s)	49, 749
BseRI	GAGGAG	2 cut(s)	73, 1181
BseXI	GCAGC	2 cut(s)	373, 376
BshFI	GGCC	2 cut(s)	164, 269
BsiSI	CCGG	1 cut(s)	1141
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	2 cut(s)	610, 773
BsmFI	GGGAC	1 cut(s)	587
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	164, 269
Bsp143I	GATC	5 cut(s)	8, 80, 328, 1225, 1256
BspACI	CCGC	1 cut(s)	694
BspANI	GGCC	2 cut(s)	164, 269
BspCNI	CTCAG	1 cut(s)	48
BspLI	GGNNCC	3 cut(s)	546, 603, 1190
BspPI	GGATC	3 cut(s)	16, 336, 1251
BspTI	CTTAAG	1 cut(s)	868
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	49, 749
BssMI	GATC	5 cut(s)	8, 80, 328, 1225, 1256
BssSI	CACGAG	1 cut(s)	926
Bst2BI	CACGAG	1 cut(s)	926
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	776
BstAFI	CTTAAG	1 cut(s)	868
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	5 cut(s)	56, 395, 609, 768, 1147
BstENI	CCTNNNNNAGG	1 cut(s)	771
BstF5I	GGATG	4 cut(s)	208, 304, 684, 979
BstKTI	GATC	5 cut(s)	11, 83, 331, 1228, 1259
BstMBI	GATC	5 cut(s)	8, 80, 328, 1225, 1256
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 373, 512, 560
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	373, 376
BstV2I	GAAGAC	1 cut(s)	707
BstX2I	RGATCY	1 cut(s)	1256
BstYI	RGATCY	1 cut(s)	1256
BsuI	GTATCC	1 cut(s)	1258
BsuRI	GGCC	2 cut(s)	164, 269
BtsCI	GGATG	4 cut(s)	208, 304, 684, 979
BtsIMutI	CAGTG	2 cut(s)	56, 147
Cac8I	GCNNGC	1 cut(s)	19
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	4 cut(s)	163, 234, 601, 662
CsiI	ACCWGGT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	2 cut(s)	37, 470
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	5 cut(s)	56, 395, 609, 768, 1147
DpnI	GATC	5 cut(s)	10, 82, 330, 1227, 1258
DpnII	GATC	5 cut(s)	8, 80, 328, 1225, 1256
DraI	TTTAAA	1 cut(s)	1105
Eam1104I	CTCTTC	1 cut(s)	776
EarI	CTCTTC	1 cut(s)	776
Eco47I	GGWCC	3 cut(s)	234, 601, 662
Eco57I	CTGAAG	5 cut(s)	326, 576, 710, 933, 1276
EcoNI	CCTNNNNNAGG	1 cut(s)	771
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	863
FaeI	CATG	2 cut(s)	40, 473
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	2 cut(s)	36, 469
FauNDI	CATATG	2 cut(s)	150, 857
FbaI	TGATCA	1 cut(s)	1225
Fnu4HI	GCNGC	2 cut(s)	362, 365
FokI	GGATG	4 cut(s)	215, 311, 671, 986
Fsp4HI	GCNGC	2 cut(s)	362, 365
FspBI	CTAG	2 cut(s)	122, 1254
GluI	GCNGC	2 cut(s)	362, 365
GsuI	CTGGAG	4 cut(s)	714, 720, 726, 732
HaeIII	GGCC	2 cut(s)	164, 269
HapII	CCGG	1 cut(s)	1141
Hin1II	CATG	2 cut(s)	40, 473
HindIII	AAGCTT	2 cut(s)	461, 995
HinfI	GANTC	6 cut(s)	130, 137, 668, 707, 873, 932
HpaII	CCGG	1 cut(s)	1141
HphI	GGTGA	2 cut(s)	206, 1103
Hpy166II	GTNNAC	2 cut(s)	1024, 1094
Hpy188I	TCNGA	7 cut(s)	8, 57, 678, 712, 913, 985, 1295
Hpy8I	GTNNAC	2 cut(s)	1024, 1094
HpyAV	CCTTC	4 cut(s)	176, 484, 496, 610
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	2 cut(s)	1096, 1118
HpyCH4V	TGCA	7 cut(s)	21, 260, 473, 563, 622, 861, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 373, 512, 560
HpyF3I	CTNAG	5 cut(s)	56, 395, 609, 768, 1147
HpySE526I	ACGT	2 cut(s)	1096, 1118
Hsp92II	CATG	2 cut(s)	40, 473
Ksp22I	TGATCA	1 cut(s)	1225
Kzo9I	GATC	5 cut(s)	8, 80, 328, 1225, 1256
LmnI	GCTCC	6 cut(s)	733, 739, 745, 751, 1016, 1194
Lsp1109I	GCAGC	2 cut(s)	373, 376
LweI	GCATC	2 cut(s)	247, 831
MabI	ACCWGGT	1 cut(s)	174
MaeI	CTAG	2 cut(s)	122, 1254
MaeII	ACGT	2 cut(s)	1096, 1118
MaeIII	GTNAC	6 cut(s)	313, 751, 785, 835, 936, 1114
MalI	GATC	5 cut(s)	10, 82, 330, 1227, 1258
MboI	GATC	5 cut(s)	8, 80, 328, 1225, 1256
MfeI	CAATTG	2 cut(s)	549, 813
MflI	RGATCY	1 cut(s)	1256
MluCI	AATT	9 cut(s)	240, 261, 282, 549, 713, 813, 918, 1100, 1285
MlyI	GAGTC	2 cut(s)	662, 882
Mph1103I	ATGCAT	1 cut(s)	863
MseI	TTAA	8 cut(s)	74, 180, 264, 579, 716, 869, 960, 1104
MslI	CAYNNNNRTG	3 cut(s)	49, 292, 474
MspCI	CTTAAG	1 cut(s)	868
MspI	CCGG	1 cut(s)	1141
MspR9I	CCNGG	1 cut(s)	176
MunI	CAATTG	2 cut(s)	549, 813
Mva1269I	GAATGC	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	4 cut(s)	266, 373, 512, 560
NdeI	CATATG	2 cut(s)	150, 857
NdeII	GATC	5 cut(s)	8, 80, 328, 1225, 1256
NlaIII	CATG	2 cut(s)	40, 473
NlaIV	GGNNCC	3 cut(s)	546, 603, 1190
NmuCI	GTSAC	2 cut(s)	835, 1114
NsiI	ATGCAT	1 cut(s)	863
PctI	GAATGC	1 cut(s)	44
PfeI	GAWTC	4 cut(s)	130, 137, 707, 932
PkrI	GCNGC	2 cut(s)	363, 366
PleI	GAGTC	2 cut(s)	662, 881
PpsI	GAGTC	2 cut(s)	662, 881
PsiI	TTATAA	1 cut(s)	1284
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	3 cut(s)	546, 603, 1190
PspPI	GGNCC	4 cut(s)	163, 234, 601, 662
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	1256
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	3 cut(s)	49, 292, 474
SaqAI	TTAA	8 cut(s)	74, 180, 264, 579, 716, 869, 960, 1104
SatI	GCNGC	2 cut(s)	362, 365
Sau3AI	GATC	5 cut(s)	8, 80, 328, 1225, 1256
Sau96I	GGNCC	4 cut(s)	163, 234, 601, 662
SchI	GAGTC	2 cut(s)	662, 882
ScrFI	CCNGG	1 cut(s)	176
SexAI	ACCWGGT	1 cut(s)	174
SfaNI	GCATC	2 cut(s)	247, 831
SinI	GGWCC	3 cut(s)	234, 601, 662
SmiMI	CAYNNNNRTG	3 cut(s)	49, 292, 474
SmlI	CTYRAG	1 cut(s)	868
SmoI	CTYRAG	1 cut(s)	868
Sse9I	AATT	9 cut(s)	240, 261, 282, 549, 713, 813, 918, 1100, 1285
SsiI	CCGC	1 cut(s)	694
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	2 cut(s)	122, 1254
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	2 cut(s)	1099, 1121
TaqII	GACCGA	1 cut(s)	719
TasI	AATT	9 cut(s)	240, 261, 282, 549, 713, 813, 918, 1100, 1285
TatI	WGTACW	1 cut(s)	118
TfiI	GAWTC	4 cut(s)	130, 137, 707, 932
Tru1I	TTAA	8 cut(s)	74, 180, 264, 579, 716, 869, 960, 1104
Tru9I	TTAA	8 cut(s)	74, 180, 264, 579, 716, 869, 960, 1104
TscAI	CASTG	2 cut(s)	56, 147
TseFI	GTSAC	2 cut(s)	835, 1114
TseI	GCWGC	2 cut(s)	361, 364
Tsp45I	GTSAC	2 cut(s)	835, 1114
TspDTI	ATGAA	7 cut(s)	137, 276, 597, 1002, 1125, 1222, 1265
TspGWI	ACGGA	4 cut(s)	557, 986, 1059, 1252
TspRI	CASTG	2 cut(s)	56, 147
Vha464I	CTTAAG	1 cut(s)	868
VpaK11BI	GGWCC	3 cut(s)	234, 601, 662
XagI	CCTNNNNNAGG	1 cut(s)	771
XapI	RAATTY	3 cut(s)	240, 282, 1100
XbaI	TCTAGA	1 cut(s)	1253
XspI	CTAG	2 cut(s)	122, 1254
Zsp2I	ATGCAT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.