Rh5BG482000

LRR repeats and ubiquitin-like domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
N/A
Physical Location & Seq
Forward (+)
76722177 .. 76756498
34322 bp
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UTR
Exon/CDS
Intron
Rh5BG482000.1

Sequence Viewer

Length: 417 bp
ATGTTGTCTGGCCTCCCAAGTGAATTGCGATATCTGCCTAAGCTTGAAGTTCTGAAAGTCAACAATAACAGGATCACCACCATTCCTCCATGGATAGGGGACCTTATTTCTCTTATTGAGGTTGATCTTTCATCAAATCTTCTGTCAGATTTGCCCGAGACATTTAGCAATTTGCATAATCTAAAGTCCCTGTCTCTCAGTAATAATGGGCTGAAATCTCTCCCTTCTTCACTATTCAAAATGTGCCTAATGCTCACAAGACTTGACTTGCACAACACAGAAATAACCATGGATATCCTTCGTCAGATTGAGGGATGGGAAAACTTTGATGAACGCCGTCGCTTGAAGCAACAGAAGAAACTGGATTTTCGTGTTGTGGGCTCTGCTGCATTTGATGAAGGTGCTGATAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

15.71

Weight (kDa)

6.11

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 13 - 52 4.4e-07 Leucine Rich repeats (2 copies)
LRR_8 PF13855 13 - 71 7.3e-11 Leucine rich repeat
LRR_4 PF12799 37 - 75 7.7e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 3 cut(s) 47, 238, 346
AluBI AGCT 2 cut(s) 43, 414
AluI AGCT 2 cut(s) 43, 414
Alw26I GTCTC 2 cut(s) 152, 198
AlwI GGATC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 386
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 383
BbvI GCAGC 1 cut(s) 373
BccI CCATC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 321
BcoDI GTCTC 2 cut(s) 152, 198
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 89, 288
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 89, 288
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 373
BshFI GGCC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 155
BslFI GGGAC 2 cut(s) 113, 172
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 152, 198
BsmFI GGGAC 2 cut(s) 113, 172
BsnI GGCC 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 383
Bsp143I GATC 2 cut(s) 72, 124
Bsp19I CCATGG 2 cut(s) 89, 288
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 366
BssECI CCNNGG 2 cut(s) 89, 288
BssMI GATC 2 cut(s) 72, 124
BssT1I CCWWGG 2 cut(s) 89, 288
BstDEI CTNAG 2 cut(s) 39, 197
BstDSI CCRYGG 2 cut(s) 89, 288
BstF5I GGATG 1 cut(s) 320
BstKTI GATC 2 cut(s) 75, 127
BstMAI GTCTC 2 cut(s) 152, 198
BstMBI GATC 2 cut(s) 72, 124
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 373
BsuRI GGCC 1 cut(s) 12
BtgI CCRYGG 2 cut(s) 89, 288
BtsCI GGATG 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 100
CviAII CATG 2 cut(s) 90, 289
CviJI RGCY 5 cut(s) 12, 43, 211, 381, 414
CviKI_1 RGCY 5 cut(s) 12, 43, 211, 381, 414
DdeI CTNAG 2 cut(s) 39, 197
DpnI GATC 2 cut(s) 74, 126
DpnII GATC 2 cut(s) 72, 124
Eco130I CCWWGG 2 cut(s) 89, 288
Eco24I GRGCYC 1 cut(s) 383
Eco32I GATATC 2 cut(s) 32, 295
Eco47I GGWCC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 100
EcoRV GATATC 2 cut(s) 32, 295
EcoT14I CCWWGG 2 cut(s) 89, 288
EcoT38I GRGCYC 1 cut(s) 383
ErhI CCWWGG 2 cut(s) 89, 288
FaeI CATG 2 cut(s) 93, 292
FaiI YATR 3 cut(s) 91, 177, 290
FaqI GGGAC 2 cut(s) 113, 172
FatI CATG 2 cut(s) 89, 288
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 1 cut(s) 327
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 387
HaeIII GGCC 1 cut(s) 12
Hin1II CATG 2 cut(s) 93, 292
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 41
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 3 cut(s) 54, 148, 306
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 342
HpyAV CCTTC 3 cut(s) 234, 308, 392
HpyCH4V TGCA 3 cut(s) 175, 271, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 39, 197
Hsp92II CATG 2 cut(s) 93, 292
Kzo9I GATC 2 cut(s) 72, 124
LpnPI CCDG 3 cut(s) 55, 203, 347
Lsp1109I GCAGC 1 cut(s) 373
MalI GATC 2 cut(s) 74, 126
MboI GATC 2 cut(s) 72, 124
MboII GAAGA 3 cut(s) 131, 219, 367
MhlI GDGCHC 1 cut(s) 383
MluCI AATT 2 cut(s) 23, 169
MnlI CCTC 4 cut(s) 23, 96, 112, 304
MwoI GCNNNNNNNGC 1 cut(s) 34
NcoI CCATGG 2 cut(s) 89, 288
NdeII GATC 2 cut(s) 72, 124
NlaIII CATG 2 cut(s) 93, 292
NlaIV GGNNCC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 100
Psp5II RGGWCCY 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 100
PspPPI RGGWCCY 1 cut(s) 100
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 2 cut(s) 72, 124
Sau96I GGNCC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 383
SetI ASST 5 cut(s) 45, 105, 123, 403, 416
SinI GGWCC 1 cut(s) 100
Sse9I AATT 2 cut(s) 23, 169
StyI CCWWGG 2 cut(s) 89, 288
TasI AATT 2 cut(s) 23, 169
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 3 cut(s) 120, 345, 411
VpaK11BI GGWCC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.