Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

89497207 .. 89521370

Gene Structure 24164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG565300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGGAATTGTTGGTGCAGCAGGTGGGGGGAGCCTTCAGTTCACAGAGTCTCATCCAATGCAAAGTCAGAATCCCCAAAAGACCAGAGCCCCTCAGTGAACCCTAGGGAGGATGATAGTAAGCTACCATCCAATCCTGAAGAAGTTGAGATCCTACGTCGTGATTCAGCTGCAAATCCATTGATTGCATTCACATTCAATGAACTAAAGATAATCACTGCAAATTTTAGGCAAGATCGTTTGTTGGGTGGTGGAGGATTTGGAAGTGTTTATAAAGGTTTCATTACGGAGGATTTAAGAGAGGGGCTCTCTTCCCTTCCAGTAGCCGTCAAGGTTCATGATGGCGATAACAGTTATCAAGGTCACAGAGAATGGCTGGACTTTCATGGGCTGATTCTTAAGACTCTATCTCACATGCGTATTCCCTCCGTTTTCCCAGGAGTGCTGCTTCCTTTGCCTTGGTCCGTAAGGATGAAGATTGCTTTTGGTGCAGCTAAAGGACTTGCCTTTCTCCATGATGCAGAGAAACCTGTTATCTATCGTGATTTCAAAACATCTAATATTCTGTTGGATCTGGTCAGTGATGAAGTTTCTGCTGAAAAAACTGTAACAGAGATTATTCAGTTCCCGGATGGTGAAATTAGAAGAAAAGAAGAGTTGCTGGAAACTGATCATCATGATGAGGATGATCAGATATACGGAGAAGGAGAGGAGGTGCAAGACAACACCAGCTCAGGCGGAAGCAACAAATTGGTGATACCAGAAGATGGCTACGAATGGAAAAAATATGGACAAAAGTTCATTAAAAATGTTGGAAAGTTCAGGAGCTATTTCAAGTGCCAAAACAGCAATTGTAGAGCCAAGAAGCGAGCCGAGTGGTCGAGCTCAGAGCCTGATGAACTTCGAGTAGTGTATGAAGGGGTGCACAATCACACCGATAATAATGCCTCATCTGCAGGATCGGCTTCACATTCACAGCAGTCGGATTCCTCATCATCTTTAAATCCGAGTACTGATGCAAACCGGTATGACTTGTACACACAAGTTTTTGGTAATCAATCCTTCTCCAAGTGGGATCAAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

362

Amino Acids

40.64

Weight (kDa)

5.54

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	255 - 311	5.5e-20	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AarI	CACCTGC	1 cut(s)	12
Acc36I	ACCTGC	1 cut(s)	12
AccB7I	CCANNNNNTGG	1 cut(s)	767
AciI	CCGC	1 cut(s)	738
AclWI	GGATC	4 cut(s)	145, 579, 967, 1083
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	2 cut(s)	21, 159
AfaI	GTAC	2 cut(s)	1012, 1037
AfiI	CCNNNNNNNGG	2 cut(s)	109, 767
AflII	CTTAAG	1 cut(s)	398
AgeI	ACCGGT	1 cut(s)	1023
AgsI	TTSAA	3 cut(s)	199, 550, 835
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	6 cut(s)	124, 170, 494, 732, 828, 885
AluI	AGCT	6 cut(s)	124, 170, 494, 732, 828, 885
Alw21I	GWGCWC	2 cut(s)	887, 927
Alw26I	GTCTC	1 cut(s)	55
Alw44I	GTGCAC	1 cut(s)	923
AlwI	GGATC	4 cut(s)	145, 579, 967, 1083
AlwNI	CAGNNNCTG	1 cut(s)	893
ApaLI	GTGCAC	1 cut(s)	923
ApeKI	GCWGC	4 cut(s)	18, 170, 445, 491
ApoI	RAATTY	1 cut(s)	223
AsiGI	ACCGGT	1 cut(s)	1023
AspA2I	CCTAGG	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	462
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	2 cut(s)	647, 766
AvaII	GGWCC	1 cut(s)	462
AvrII	CCTAGG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	927
BanII	GRGCYC	3 cut(s)	92, 309, 887
Bbv12I	GWGCWC	2 cut(s)	887, 927
BbvI	GCAGC	4 cut(s)	30, 157, 432, 503
BccI	CCATC	4 cut(s)	136, 335, 626, 761
BceAI	ACGGC	1 cut(s)	311
BcgI	CGANNNNNNTGC	2 cut(s)	926, 960
BciT130I	CCWGG	1 cut(s)	438
BclI	TGATCA	2 cut(s)	670, 688
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	954
BfrI	CTTAAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	12
BisI	GCNGC	4 cut(s)	19, 171, 446, 492
BlnI	CCTAGG	1 cut(s)	104
BlsI	GCNGC	4 cut(s)	20, 172, 447, 493
BmcAI	AGTACT	1 cut(s)	1012
Bme1390I	CCNGG	2 cut(s)	438, 629
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	438, 629
BmsI	GCATC	2 cut(s)	508, 1006
BplI	GAGNNNNNCTC	4 cut(s)	291, 323, 293, 325
Bpu10I	CCTNAGC	1 cut(s)	733
BpuMI	CCSGG	1 cut(s)	629
BsaJI	CCNNGG	3 cut(s)	104, 436, 458
BsaWI	WCCGGW	1 cut(s)	1023
BsaXI	ACNNNNNCTCC	2 cut(s)	699, 729
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 767
Bse118I	RCCGGY	1 cut(s)	1023
Bse1I	ACTGG	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	104, 436, 458
BseGI	GGATG	6 cut(s)	53, 118, 128, 477, 637, 691
BseLI	CCNNNNNNNGG	2 cut(s)	109, 767
BseMII	CTCAG	3 cut(s)	108, 747, 900
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	725
BseSI	GKGCMC	1 cut(s)	927
BseXI	GCAGC	4 cut(s)	30, 157, 432, 503
BsgI	GTGCAG	2 cut(s)	37, 510
BshTI	ACCGGT	1 cut(s)	1023
BsiHKAI	GWGCWC	2 cut(s)	887, 927
BsiSI	CCGG	2 cut(s)	629, 1024
BslI	CCNNNNNNNGG	2 cut(s)	109, 767
BsmAI	GTCTC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	188
Bsp1286I	GDGCHC	4 cut(s)	92, 309, 887, 927
Bsp1407I	TGTACA	1 cut(s)	1035
Bsp143I	GATC	7 cut(s)	150, 235, 571, 670, 688, 959, 1075
BspACI	CCGC	1 cut(s)	738
BspCNI	CTCAG	3 cut(s)	107, 746, 899
BspHI	TCATGA	2 cut(s)	337, 676
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	958
BspMI	ACCTGC	1 cut(s)	12
BspPI	GGATC	4 cut(s)	145, 579, 967, 1083
BspTI	CTTAAG	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	1023
BsrGI	TGTACA	1 cut(s)	1035
BsrI	ACTGG	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	1023
BssECI	CCNNGG	3 cut(s)	104, 436, 458
BssMI	GATC	7 cut(s)	150, 235, 571, 670, 688, 959, 1075
BssT1I	CCWWGG	2 cut(s)	104, 458
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	353, 607
Bst6I	CTCTTC	2 cut(s)	316, 648
BstAFI	CTTAAG	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	1035
BstC8I	GCNNGC	1 cut(s)	870
BstDEI	CTNAG	3 cut(s)	94, 733, 886
BstF5I	GGATG	6 cut(s)	53, 118, 128, 477, 637, 691
BstKTI	GATC	7 cut(s)	153, 238, 574, 673, 691, 962, 1078
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	7 cut(s)	150, 235, 571, 670, 688, 959, 1075
BstMWI	GCNNNNNNNGC	5 cut(s)	454, 488, 846, 953, 962
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	2 cut(s)	436, 627
BstSFI	CTRYAG	1 cut(s)	954
BstSLI	GKGCMC	1 cut(s)	927
BstV1I	GCAGC	4 cut(s)	30, 157, 432, 503
BstX2I	RGATCY	2 cut(s)	150, 571
BstYI	RGATCY	2 cut(s)	150, 571
BtsCI	GGATG	6 cut(s)	53, 118, 128, 477, 637, 691
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	102, 216, 586
BveI	ACCTGC	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	870
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	2 cut(s)	337, 676
Cfr10I	RCCGGY	1 cut(s)	1023
Cfr13I	GGNCC	1 cut(s)	462
Csp6I	GTAC	2 cut(s)	1011, 1036
CspAI	ACCGGT	1 cut(s)	1023
CviAII	CATG	5 cut(s)	338, 386, 415, 515, 677
CviQI	GTAC	2 cut(s)	1011, 1036
DdeI	CTNAG	3 cut(s)	94, 733, 886
DpnI	GATC	7 cut(s)	152, 237, 573, 672, 690, 961, 1077
DpnII	GATC	7 cut(s)	150, 235, 571, 670, 688, 959, 1075
DraI	TTTAAA	1 cut(s)	1002
Eam1104I	CTCTTC	2 cut(s)	316, 648
EarI	CTCTTC	2 cut(s)	316, 648
EciI	GGCGGA	1 cut(s)	753
Ecl136II	GAGCTC	1 cut(s)	885
Eco130I	CCWWGG	2 cut(s)	104, 458
Eco24I	GRGCYC	3 cut(s)	92, 309, 887
Eco47I	GGWCC	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	885
Eco57I	CTGAAG	2 cut(s)	21, 159
EcoICRI	GAGCTC	1 cut(s)	885
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	104, 458
EcoT38I	GRGCYC	3 cut(s)	92, 309, 887
ErhI	CCWWGG	2 cut(s)	104, 458
FaeI	CATG	5 cut(s)	341, 389, 418, 518, 680
FatI	CATG	5 cut(s)	337, 385, 414, 514, 676
FbaI	TGATCA	2 cut(s)	670, 688
Fnu4HI	GCNGC	4 cut(s)	19, 171, 446, 492
FokI	GGATG	6 cut(s)	40, 115, 125, 484, 644, 698
FriOI	GRGCYC	3 cut(s)	92, 309, 887
Fsp4HI	GCNGC	4 cut(s)	19, 171, 446, 492
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	4 cut(s)	19, 171, 446, 492
HapII	CCGG	2 cut(s)	629, 1024
Hin1II	CATG	5 cut(s)	341, 389, 418, 518, 680
HinfI	GANTC	6 cut(s)	48, 71, 164, 394, 403, 986
HpaII	CCGG	2 cut(s)	629, 1024
HphI	GGTGA	2 cut(s)	647, 766
Hpy166II	GTNNAC	4 cut(s)	43, 100, 925, 1038
Hpy188I	TCNGA	5 cut(s)	70, 693, 889, 985, 1008
Hpy188III	TCNNGA	6 cut(s)	137, 161, 338, 542, 677, 823
Hpy8I	GTNNAC	4 cut(s)	43, 100, 925, 1038
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	5 cut(s)	45, 326, 698, 911, 1072
HpyCH4III	ACNGT	2 cut(s)	353, 607
HpyCH4IV	ACGT	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	5 cut(s)	454, 488, 846, 953, 962
HpyF3I	CTNAG	3 cut(s)	94, 733, 886
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	5 cut(s)	341, 389, 418, 518, 680
Ksp22I	TGATCA	2 cut(s)	670, 688
Kzo9I	GATC	7 cut(s)	150, 235, 571, 670, 688, 959, 1075
LmnI	GCTCC	2 cut(s)	31, 825
Lsp1109I	GCAGC	4 cut(s)	30, 157, 432, 503
LweI	GCATC	2 cut(s)	508, 1006
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	362, 607
MalI	GATC	7 cut(s)	152, 237, 573, 672, 690, 961, 1077
MboI	GATC	7 cut(s)	150, 235, 571, 670, 688, 959, 1075
MboII	GAAGA	6 cut(s)	152, 303, 487, 657, 665, 776
MfeI	CAATTG	1 cut(s)	850
MflI	RGATCY	2 cut(s)	150, 571
MhlI	GDGCHC	4 cut(s)	92, 309, 887, 927
MluCI	AATT	5 cut(s)	7, 223, 639, 749, 850
MlyI	GAGTC	2 cut(s)	57, 397
MmeI	TCCRAC	3 cut(s)	549, 793, 963
MseI	TTAA	4 cut(s)	296, 399, 804, 1001
MslI	CAYNNNNRTG	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	170
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	2 cut(s)	629, 1024
MspR9I	CCNGG	2 cut(s)	438, 629
MunI	CAATTG	1 cut(s)	850
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	5 cut(s)	454, 488, 846, 953, 962
NciI	CCSGG	1 cut(s)	629
NdeII	GATC	7 cut(s)	150, 235, 571, 670, 688, 959, 1075
NlaIII	CATG	5 cut(s)	341, 389, 418, 518, 680
NlaIV	GGNNCC	1 cut(s)	33
NmeAIII	GCCGAG	1 cut(s)	898
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	1 cut(s)	418
PagI	TCATGA	2 cut(s)	337, 676
PaqCI	CACCTGC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	4 cut(s)	71, 164, 394, 986
PflMI	CCANNNNNTGG	1 cut(s)	767
PfoI	TCCNGGA	1 cut(s)	627
PinAI	ACCGGT	1 cut(s)	1023
PkrI	GCNGC	4 cut(s)	20, 172, 447, 493
PleI	GAGTC	2 cut(s)	56, 397
PpsI	GAGTC	2 cut(s)	56, 397
PsiI	TTATAA	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	887
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	958
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	2 cut(s)	150, 571
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	1012, 1037
RsaNI	GTAC	2 cut(s)	1011, 1036
RseI	CAYNNNNRTG	1 cut(s)	678
SacI	GAGCTC	1 cut(s)	887
SaqAI	TTAA	4 cut(s)	296, 399, 804, 1001
SatI	GCNGC	4 cut(s)	19, 171, 446, 492
Sau3AI	GATC	7 cut(s)	150, 235, 571, 670, 688, 959, 1075
Sau96I	GGNCC	1 cut(s)	462
ScaI	AGTACT	1 cut(s)	1012
SchI	GAGTC	2 cut(s)	57, 397
ScrFI	CCNGG	2 cut(s)	438, 629
SduI	GDGCHC	4 cut(s)	92, 309, 887, 927
SfaNI	GCATC	2 cut(s)	508, 1006
SfcI	CTRYAG	1 cut(s)	954
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	5 cut(s)	7, 223, 639, 749, 850
SsiI	CCGC	1 cut(s)	738
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	887
StyD4I	CCNGG	2 cut(s)	436, 627
StyI	CCWWGG	2 cut(s)	104, 458
TaaI	ACNGT	2 cut(s)	353, 607
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	881, 904
TasI	AATT	5 cut(s)	7, 223, 639, 749, 850
TatI	WGTACW	2 cut(s)	1010, 1035
TfiI	GAWTC	4 cut(s)	71, 164, 394, 986
Tru1I	TTAA	4 cut(s)	296, 399, 804, 1001
Tru9I	TTAA	4 cut(s)	296, 399, 804, 1001
TscAI	CASTG	3 cut(s)	102, 223, 586
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	4 cut(s)	18, 170, 445, 491
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	9 cut(s)	216, 271, 326, 374, 488, 600, 790, 912, 930
TspGWI	ACGGA	4 cut(s)	302, 418, 454, 714
TspRI	CASTG	3 cut(s)	102, 223, 586
Van91I	CCANNNNNTGG	1 cut(s)	767
Vha464I	CTTAAG	1 cut(s)	398
VneI	GTGCAC	1 cut(s)	923
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	418
XmaJI	CCTAGG	1 cut(s)	104
XspI	CTAG	1 cut(s)	105
ZrmI	AGTACT	1 cut(s)	1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.