Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2884669 .. 2885383

Gene Structure 715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG041900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCTTCGCTATTCAAACCGCTCCATTTATGGAACCTTAGAAACTTTGCCTTTTTTTTCTTTAGTGAACCCATTTAACGTCTCAGCGTCAAGCCTGGATGGCTTCAACCAAGAGCTAAGGAAGTTGCTCAAAATCCTAAAAAGCGAAGCCGCAAAAGATGGTTCCCTTATTAAGTTTGCAACTGGGAACGCCAACGCTCCAGGTGTCACAGCAATATATGCACTTGTACAGTGTACGCCGGATTTGTCCCAGCTAGAGTGCAATGACTGCTTAGACGGTGCCTTTGTAGACATCCCAACCTGTTGTGATGGGAGGAAAGGTGGGAGAGTCATTAGACCCAGCTGTAACTTCAGATATGAAGACTTCCGTTTTTTTTACCCTAACGCGGTACTGCCATCGCCACCACTGCCATCAACAATATCTCCTCAGTCATCAGCAATATCTCCTCAGCCAACAACAAATACTTCCACAACTCCCGCAGGACTGAAGAATGATAAATCCCGATCTCGAACTGTCATCATTATTGTTGTGCCAATCGTTAATTATCTCTCTGGTGCTAATTATATCCCTCTACGTTTGCTTAAAAGCAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

198

Amino Acids

21.6

Weight (kDa)

9.07

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	33 - 121	1.8e-13	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	1 cut(s)	386
AciI	CCGC	4 cut(s)	19, 150, 386, 477
AcuI	CTGAAG	2 cut(s)	334, 506
AfaI	GTAC	3 cut(s)	228, 235, 390
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	15, 106
AjnI	CCWGG	2 cut(s)	93, 199
AluBI	AGCT	3 cut(s)	115, 253, 342
AluI	AGCT	3 cut(s)	115, 253, 342
Alw26I	GTCTC	1 cut(s)	85
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
BanI	GGYRCC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	447
BccI	CCATC	5 cut(s)	92, 152, 302, 403, 418
BciT130I	CCWGG	2 cut(s)	95, 201
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	99
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	2 cut(s)	95, 201
BmiI	GGNNCC	3 cut(s)	34, 163, 280
BmrFI	CCNGG	2 cut(s)	95, 201
BmrI	ACTGGG	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	183
Bpu10I	CCTNAGC	2 cut(s)	116, 447
BsaXI	ACNNNNNCTCC	4 cut(s)	304, 334, 406, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	95, 201
BseGI	GGATG	2 cut(s)	103, 291
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	3 cut(s)	96, 440, 461
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	2 cut(s)	414, 435
BseYI	CCCAGC	2 cut(s)	249, 338
Bsh1236I	CGCG	1 cut(s)	386
BshNI	GGYRCC	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	503
BspACI	CCGC	4 cut(s)	19, 150, 386, 477
BspCNI	CTCAG	3 cut(s)	95, 439, 460
BspFNI	CGCG	1 cut(s)	386
BspLI	GGNNCC	3 cut(s)	34, 163, 280
BspT107I	GGYRCC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	268
BsrGI	TGTACA	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	503
Bst2UI	CCWGG	2 cut(s)	95, 201
Bst4CI	ACNGT	3 cut(s)	231, 278, 514
BstAPI	GCANNNNNTGC	2 cut(s)	218, 267
BstAUI	TGTACA	1 cut(s)	226
BstDEI	CTNAG	6 cut(s)	37, 82, 116, 271, 426, 447
BstF5I	GGATG	2 cut(s)	103, 291
BstFNI	CGCG	1 cut(s)	386
BstKTI	GATC	1 cut(s)	506
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	503
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 218, 267, 406
BstNI	CCWGG	2 cut(s)	95, 201
BstSCI	CCNGG	2 cut(s)	93, 199
BstUI	CGCG	1 cut(s)	386
BstV2I	GAAGAC	1 cut(s)	366
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	103, 291
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	236, 404
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	3 cut(s)	227, 234, 389
CviJI	RGCY	7 cut(s)	93, 102, 115, 149, 253, 342, 451
CviKI_1	RGCY	7 cut(s)	93, 102, 115, 149, 253, 342, 451
CviQI	GTAC	3 cut(s)	227, 234, 389
DdeI	CTNAG	6 cut(s)	37, 82, 116, 271, 426, 447
DpnI	GATC	1 cut(s)	505
DpnII	GATC	1 cut(s)	503
Eco57I	CTGAAG	2 cut(s)	334, 506
EcoRII	CCWGG	2 cut(s)	93, 199
Esp3I	CGTCTC	1 cut(s)	85
FaiI	YATR	5 cut(s)	30, 217, 219, 357, 564
FaqI	GGGAC	1 cut(s)	232
FauI	CCCGC	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	2 cut(s)	110, 278
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	1 cut(s)	150
GsaI	CCCAGC	2 cut(s)	253, 342
GsuI	CTGGAG	1 cut(s)	183
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	1 cut(s)	75
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	1 cut(s)	239
Hpy166II	GTNNAC	3 cut(s)	67, 234, 289
Hpy188I	TCNGA	1 cut(s)	353
Hpy188III	TCNNGA	2 cut(s)	501, 507
Hpy8I	GTNNAC	3 cut(s)	67, 234, 289
HpyCH4III	ACNGT	3 cut(s)	231, 278, 514
HpyCH4IV	ACGT	2 cut(s)	78, 574
HpyCH4V	TGCA	3 cut(s)	179, 221, 261
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 218, 267, 406
HpyF3I	CTNAG	6 cut(s)	37, 82, 116, 271, 426, 447
HpySE526I	ACGT	2 cut(s)	78, 574
Kzo9I	GATC	1 cut(s)	503
LmnI	GCTCC	2 cut(s)	26, 202
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	2 cut(s)	78, 574
MaeIII	GTNAC	2 cut(s)	205, 344
MalI	GATC	1 cut(s)	505
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	1 cut(s)	503
MboII	GAAGA	2 cut(s)	371, 499
MluCI	AATT	2 cut(s)	541, 559
MlyI	GAGTC	1 cut(s)	336
MnlI	CCTC	4 cut(s)	306, 435, 456, 579
MseI	TTAA	4 cut(s)	75, 171, 540, 582
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	95, 201
MvaI	CCWGG	2 cut(s)	95, 201
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	4 cut(s)	99, 218, 267, 406
NdeII	GATC	1 cut(s)	503
NlaIV	GGNNCC	3 cut(s)	34, 163, 280
NmuCI	GTSAC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	93, 199
PspFI	CCCAGC	2 cut(s)	249, 338
PspGI	CCWGG	2 cut(s)	93, 199
PspN4I	GGNNCC	3 cut(s)	34, 163, 280
PvuII	CAGCTG	1 cut(s)	342
RsaI	GTAC	3 cut(s)	228, 235, 390
RsaNI	GTAC	3 cut(s)	227, 234, 389
SaqAI	TTAA	4 cut(s)	75, 171, 540, 582
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	503
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	95, 201
SetI	ASST	9 cut(s)	38, 81, 117, 205, 255, 302, 322, 344, 577
Sse9I	AATT	2 cut(s)	541, 559
SsiI	CCGC	4 cut(s)	19, 150, 386, 477
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	2 cut(s)	93, 199
TaaI	ACNGT	3 cut(s)	231, 278, 514
TaiI	ACGT	2 cut(s)	81, 577
TaqI	TCGA	1 cut(s)	508
TasI	AATT	2 cut(s)	541, 559
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	1 cut(s)	152
Tru1I	TTAA	4 cut(s)	75, 171, 540, 582
Tru9I	TTAA	4 cut(s)	75, 171, 540, 582
TscAI	CASTG	2 cut(s)	236, 411
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	372
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	2 cut(s)	236, 411
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.