Rh5CG048200

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
N/A
Physical Location & Seq
Forward (+)
3402392 .. 3402826
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG048200.1

Sequence Viewer

Length: 435 bp
ATGAAGGAAATATGGGCTGCACCAAAGTACCCATGTGACCAATATGGAGAGTGTGGTGCCTTCAGTACATGTAGTCCTGACAATATTCAAGGTCTTAAGTGTACATGTTTGCCGGGCTATGAACCAAGGTCTTTTGAGGATTGGTATCAGGGAGATGCATCAGATGGTTGTGTGAGTAAGCAGCCACAAGTCTCTAAGTGTGAGAATGGAGGTTTCAAGGTGGTGCAAAATGTGAAGCTTCCAGATGCATCAATATCAGCTTGGTTGGACACAAAAATGAGTGCCACAGCGTGCAAACTTGCATGCTTGAGGAATTGTTCATGCCTTGCGTATTCAAGCTTAGAAATTGAAGGAGGAAGTGGTTGCTTGGCCTGGTATGGTGAATTGATGGACATTTTATTGTTTGCAGAGGAGGGAAGCGACTTCTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

144

Amino Acids

15.71

Weight (kDa)

4.42

Isoelectric Point (pI)

59.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 3 - 43 2.1e-08 S-locus glycoprotein domain
PAN_2 PF08276 67 - 132 7e-19 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 46
AdeI CACNNNGTG 1 cut(s) 291
AfaI GTAC 3 cut(s) 29, 67, 103
AflII CTTAAG 1 cut(s) 95
AflIII ACRYGT 2 cut(s) 68, 104
AgsI TTSAA 4 cut(s) 89, 217, 336, 350
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 3 cut(s) 238, 260, 339
AluI AGCT 3 cut(s) 238, 260, 339
Alw26I GTCTC 1 cut(s) 196
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 2 cut(s) 17, 181
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 392
BaeI ACNNNNGTAYC 2 cut(s) 11, 44
BanI GGYRCC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 4, 193
BccI CCATC 2 cut(s) 158, 382
BciT130I CCWGG 1 cut(s) 373
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 196
BfrI CTTAAG 1 cut(s) 95
BisI GCNGC 2 cut(s) 18, 182
BlsI GCNGC 2 cut(s) 19, 183
Bme1390I CCNGG 2 cut(s) 114, 373
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 114, 373
BmsI GCATC 4 cut(s) 145, 167, 235, 257
BpuEI CTTGAG 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 125
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 125
BseJI GATNNNNATC 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 2 cut(s) 4, 193
BshFI GGCC 1 cut(s) 371
BshNI GGYRCC 1 cut(s) 56
BsiSI CCGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 196
BsnI GGCC 1 cut(s) 371
Bsp1407I TGTACA 1 cut(s) 101
BspANI GGCC 1 cut(s) 371
BspLI GGNNCC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 56
BspTI CTTAAG 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 373
BstAFI CTTAAG 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 292, 304
BstDEI CTNAG 2 cut(s) 195, 340
BstMAI GTCTC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 373
BstNSI RCATGY 3 cut(s) 72, 108, 306
BstSCI CCNGG 2 cut(s) 112, 371
BstV1I GCAGC 2 cut(s) 4, 193
BsuRI GGCC 1 cut(s) 371
Cac8I GCNNGC 2 cut(s) 292, 304
Csp6I GTAC 3 cut(s) 28, 66, 102
CviAII CATG 5 cut(s) 33, 69, 105, 303, 321
CviJI RGCY 7 cut(s) 17, 117, 184, 238, 260, 339, 371
CviKI_1 RGCY 7 cut(s) 17, 117, 184, 238, 260, 339, 371
CviQI GTAC 3 cut(s) 28, 66, 102
DdeI CTNAG 2 cut(s) 195, 340
DraIII CACNNNGTG 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 125
EcoT22I ATGCAT 2 cut(s) 160, 250
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 5 cut(s) 36, 72, 108, 306, 324
FatI CATG 5 cut(s) 32, 68, 104, 302, 320
Fnu4HI GCNGC 2 cut(s) 18, 182
Fsp4HI GCNGC 2 cut(s) 18, 182
GluI GCNGC 2 cut(s) 18, 182
HaeIII GGCC 1 cut(s) 371
HapII CCGG 1 cut(s) 113
Hin1II CATG 5 cut(s) 36, 72, 108, 306, 324
HindIII AAGCTT 2 cut(s) 236, 337
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 77, 242
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 2 cut(s) 70, 344
HpyCH4V TGCA 7 cut(s) 20, 158, 226, 248, 294, 302, 407
HpyF3I CTNAG 2 cut(s) 195, 340
Hsp92II CATG 5 cut(s) 36, 72, 108, 306, 324
LpnPI CCDG 6 cut(s) 90, 126, 134, 255, 358, 385
Lsp1109I GCAGC 2 cut(s) 4, 193
LweI GCATC 4 cut(s) 145, 167, 235, 257
MaeIII GTNAC 1 cut(s) 35
MluCI AATT 3 cut(s) 313, 345, 383
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 6 cut(s) 130, 203, 303, 347, 403, 406
Mph1103I ATGCAT 2 cut(s) 160, 250
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 275
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 114, 373
MvaI CCWGG 1 cut(s) 373
NciI CCSGG 1 cut(s) 114
NlaIII CATG 5 cut(s) 36, 72, 108, 306, 324
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 35
NsiI ATGCAT 2 cut(s) 160, 250
NspI RCATGY 3 cut(s) 72, 108, 306
PaeI GCATGC 1 cut(s) 306
PciI ACATGT 2 cut(s) 68, 104
PkrI GCNGC 2 cut(s) 19, 183
PscI ACATGT 2 cut(s) 68, 104
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 58
RsaI GTAC 3 cut(s) 29, 67, 103
RsaNI GTAC 3 cut(s) 28, 66, 102
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 2 cut(s) 18, 182
ScrFI CCNGG 2 cut(s) 114, 373
SetI ASST 7 cut(s) 94, 131, 214, 222, 240, 262, 341
SfaNI GCATC 4 cut(s) 145, 167, 235, 257
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 95, 307
SmoI CTYRAG 2 cut(s) 95, 307
SphI GCATGC 1 cut(s) 306
Sse9I AATT 3 cut(s) 313, 345, 383
SspI AATATT 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 112, 371
StyI CCWWGG 1 cut(s) 125
TasI AATT 3 cut(s) 313, 345, 383
TatI WGTACW 2 cut(s) 65, 101
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 2 cut(s) 17, 181
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 3 cut(s) 17, 135, 309
Vha464I CTTAAG 1 cut(s) 95
XceI RCATGY 3 cut(s) 72, 108, 306
Zsp2I ATGCAT 2 cut(s) 160, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.