Rh5CG129100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
N/A
Physical Location & Seq
Forward (+)
10731417 .. 10731725
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG129100.1

Sequence Viewer

Length: 309 bp
ATGGCCAAATCCTCCCGAAGACGCAAGCCAAAACTGGACGGAGCTCCCCGAGAAAGCTACGGCGTCGATACTCTCACGGCTCGGAGCGATCGAGATCCTGGAGAGCGCTCAGAAAGTGTGCATGAAATGGCGCGAACTCTACCATGTGGAGCAAGATTGACATGCGAAACGATGGTGAGATTAACTATGACTTGGAGGAGATGTACGTGCCGCCACGCCGTTGATAGGAGCTCCGGTAATCTTGTTGATATTAGCATCGAGTATTTGGGCACCGATGAGCTGCTTGAATACATCACTGAAAGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

102

Amino Acids

11.68

Weight (kDa)

8.43

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AccII CGCG 1 cut(s) 133
AciI CCGC 1 cut(s) 211
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 2 cut(s) 205, 305
AfeI AGCGCT 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 1 cut(s) 287
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 4 cut(s) 44, 57, 231, 280
AluI AGCT 4 cut(s) 44, 57, 231, 280
Alw21I GWGCWC 2 cut(s) 46, 233
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 48
Aor51HI AGCGCT 1 cut(s) 107
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 280
AspLEI GCGC 2 cut(s) 108, 133
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 48
BaeGI GKGCMC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 2 cut(s) 46, 233
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 2 cut(s) 46, 233
BbvI GCAGC 1 cut(s) 267
BccI CCATC 1 cut(s) 166
BceAI ACGGC 3 cut(s) 76, 93, 203
BciT130I CCWGG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 2 cut(s) 211, 281
BlsI GCNGC 2 cut(s) 212, 282
Bme1390I CCNGG 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 4 cut(s) 187, 217, 220, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 133
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 2 cut(s) 46, 233
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 225
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 3 cut(s) 46, 233, 272
Bsp143I GATC 2 cut(s) 88, 94
BspACI CCGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 122
BspFNI CGCG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 271
BspPI GGATC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 269
BsrI ACTGG 1 cut(s) 39
BssMI GATC 2 cut(s) 88, 94
BssNI GRCGYC 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 63
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 2 cut(s) 108, 133
BstKTI GATC 2 cut(s) 91, 97
BstMBI GATC 2 cut(s) 88, 94
BstMCI CGRYCG 1 cut(s) 91
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 26
CfoI GCGC 2 cut(s) 108, 133
CseI GACGC 2 cut(s) 30, 52
Csp6I GTAC 2 cut(s) 204, 304
CviAII CATG 3 cut(s) 122, 144, 162
CviJI RGCY 7 cut(s) 5, 28, 44, 57, 80, 231, 280
CviKI_1 RGCY 7 cut(s) 5, 28, 44, 57, 80, 231, 280
CviQI GTAC 2 cut(s) 204, 304
DdeI CTNAG 1 cut(s) 109
DpnI GATC 2 cut(s) 90, 96
DpnII GATC 2 cut(s) 88, 94
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 2 cut(s) 44, 231
Eco24I GRGCYC 2 cut(s) 46, 233
Eco47III AGCGCT 1 cut(s) 107
Eco53kI GAGCTC 2 cut(s) 44, 231
Eco88I CYCGRG 1 cut(s) 48
EcoICRI GAGCTC 2 cut(s) 44, 231
EcoRII CCWGG 1 cut(s) 97
EcoT38I GRGCYC 2 cut(s) 46, 233
FaeI CATG 3 cut(s) 125, 147, 165
FaiI YATR 4 cut(s) 123, 145, 163, 188
FatI CATG 3 cut(s) 121, 143, 161
Fnu4HI GCNGC 2 cut(s) 211, 281
FriOI GRGCYC 2 cut(s) 46, 233
Fsp4HI GCNGC 2 cut(s) 211, 281
GlaI GCGC 2 cut(s) 107, 132
GluI GCNGC 2 cut(s) 211, 281
GsuI CTGGAG 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 234
HgaI GACGC 2 cut(s) 30, 52
HhaI GCGC 2 cut(s) 108, 133
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 3 cut(s) 125, 147, 165
Hin6I GCGC 2 cut(s) 106, 131
HinP1I GCGC 2 cut(s) 106, 131
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 84, 112
Hpy188III TCNNGA 2 cut(s) 15, 92
Hpy99I CGWCG 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 1 cut(s) 206
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 3 cut(s) 125, 147, 165
HspAI GCGC 2 cut(s) 106, 131
Kzo9I GATC 2 cut(s) 88, 94
LmnI GCTCC 6 cut(s) 41, 49, 84, 149, 228, 236
LpnPI CCDG 4 cut(s) 20, 84, 111, 247
Lsp1109I GCAGC 1 cut(s) 267
LweI GCATC 1 cut(s) 264
MaeII ACGT 1 cut(s) 206
MalI GATC 2 cut(s) 90, 96
MboI GATC 2 cut(s) 88, 94
MboII GAAGA 1 cut(s) 30
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 3 cut(s) 46, 233, 272
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 22, 189
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MvnI CGCG 1 cut(s) 133
NdeII GATC 2 cut(s) 88, 94
NlaIII CATG 3 cut(s) 125, 147, 165
NlaIV GGNNCC 1 cut(s) 271
NspI RCATGY 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 2 cut(s) 212, 282
Ple19I CGATCG 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 207
Psp124BI GAGCTC 2 cut(s) 46, 233
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 271
PsuI RGATCY 1 cut(s) 94
PvuI CGATCG 1 cut(s) 91
RsaI GTAC 2 cut(s) 205, 305
RsaNI GTAC 2 cut(s) 204, 304
SacI GAGCTC 2 cut(s) 46, 233
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 2 cut(s) 211, 281
Sau3AI GATC 2 cut(s) 88, 94
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 3 cut(s) 46, 233, 272
SetI ASST 6 cut(s) 46, 59, 209, 233, 282, 305
SfaNI GCATC 1 cut(s) 264
SsiI CCGC 1 cut(s) 211
SstI GAGCTC 2 cut(s) 46, 233
StyD4I CCNGG 1 cut(s) 97
TaiI ACGT 1 cut(s) 209
TaqI TCGA 3 cut(s) 66, 91, 258
TauI GCSGC 1 cut(s) 213
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 1 cut(s) 301
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 1 cut(s) 301
XceI RCATGY 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.