Rh5CG134400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
N/A
Physical Location & Seq
Reverse (-)
11233216 .. 11233917
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG134400.1

Sequence Viewer

Length: 438 bp
ATGGGAGAGTCTAAAAATGTACAAAAGGGATCAGAGTCTTCCTCTGCAACCGGCCAGAGCGGCCAAGACTGGACGGAACTCCCGGACAACATTACCGCGTCGATACTATTACTGGCGGATCTCAGAGCATTCGGTATCCTAACCAAGTATCAGATGATGAAGTACGTAGCTTCCAAATTTCCCCTATTGGAGGAGCTTGACCTCGAGATTGAAAGATGGTCACTCTCGCCTGAAACTCTGGAACTGCTTGGGCGATCATGCCCTCTTTTGAAATCATTAAAATGGAAAAAAGATAGAACTCATGGAATGGCTAAGGGTATAGGATGGGATGTTGACTATGCAGATTGCAGAGGCTATCGCAGGAACGATGCATATGGTATACACCACCTCGGGTTTGATGGGTTTGATCTGACTAATGACGCCCTAAAGAAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

145

Amino Acids

16.33

Weight (kDa)

5.91

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 379
AccII CGCG 1 cut(s) 98
AciI CCGC 3 cut(s) 60, 96, 116
AclWI GGATC 2 cut(s) 37, 126
AcoI YGGCCR 2 cut(s) 52, 61
AcsI RAATTY 2 cut(s) 176, 432
AcyI GRCGYC 1 cut(s) 420
AfaI GTAC 2 cut(s) 21, 164
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 2 cut(s) 212, 271
AluBI AGCT 2 cut(s) 170, 196
AluI AGCT 2 cut(s) 170, 196
AlwI GGATC 2 cut(s) 37, 126
Ama87I CYCGRG 2 cut(s) 203, 389
AoxI GGCC 2 cut(s) 52, 61
ApoI RAATTY 2 cut(s) 176, 432
AsuC2I CCSGG 1 cut(s) 83
AvaI CYCGRG 2 cut(s) 203, 389
BbsI GAAGAC 1 cut(s) 30
BccI CCATC 3 cut(s) 210, 318, 392
BciVI GTATCC 1 cut(s) 146
BcnI CCSGG 1 cut(s) 83
BfuI GTATCC 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 60
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 83
BmeT110I CYCGRG 2 cut(s) 203, 389
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 26, 58
Bpu10I CCTNAGC 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 388
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 74, 117
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 2 cut(s) 329, 334
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 2 cut(s) 74, 117
BseRI GAGGAG 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 2 cut(s) 54, 63
BsiHKCI CYCGRG 2 cut(s) 203, 389
BsiSI CCGG 2 cut(s) 51, 83
BslI CCNNNNNNNGG 1 cut(s) 190
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 2 cut(s) 54, 63
BsoBI CYCGRG 2 cut(s) 203, 389
Bsp1407I TGTACA 1 cut(s) 19
Bsp143I GATC 4 cut(s) 29, 118, 254, 406
BspACI CCGC 3 cut(s) 60, 96, 116
BspANI GGCC 2 cut(s) 54, 63
BspCNI CTCAG 1 cut(s) 135
BspFNI CGCG 1 cut(s) 98
BspPI GGATC 2 cut(s) 37, 126
BsrBI CCGCTC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 50
BsrGI TGTACA 1 cut(s) 19
BsrI ACTGG 2 cut(s) 74, 117
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 4 cut(s) 29, 118, 254, 406
BssNAI GTATAC 1 cut(s) 380
BssNI GRCGYC 1 cut(s) 420
Bst1107I GTATAC 1 cut(s) 380
BstACI GRCGYC 1 cut(s) 420
BstAUI TGTACA 1 cut(s) 19
BstBAI YACGTR 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 122, 312
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 329, 334
BstFNI CGCG 1 cut(s) 98
BstKTI GATC 4 cut(s) 32, 121, 257, 409
BstMBI GATC 4 cut(s) 29, 118, 254, 406
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 81
BstSNI TACGTA 1 cut(s) 166
BstUI CGCG 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BstZ17I GTATAC 1 cut(s) 380
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 2 cut(s) 54, 63
BtsCI GGATG 2 cut(s) 329, 334
Cfr10I RCCGGY 1 cut(s) 50
CseI GACGC 2 cut(s) 87, 428
Csp6I GTAC 2 cut(s) 20, 163
CviAII CATG 2 cut(s) 258, 302
CviJI RGCY 6 cut(s) 54, 63, 170, 196, 311, 354
CviKI_1 RGCY 6 cut(s) 54, 63, 170, 196, 311, 354
CviQI GTAC 2 cut(s) 20, 163
DdeI CTNAG 2 cut(s) 122, 312
DpnI GATC 4 cut(s) 31, 120, 256, 408
DpnII GATC 4 cut(s) 29, 118, 254, 406
EaeI YGGCCR 2 cut(s) 52, 61
EciI GGCGGA 1 cut(s) 131
Eco105I TACGTA 1 cut(s) 166
Eco88I CYCGRG 2 cut(s) 203, 389
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 373
FaeI CATG 2 cut(s) 261, 305
FaiI YATR 7 cut(s) 259, 303, 320, 339, 373, 375, 380
FatI CATG 2 cut(s) 257, 301
FauNDI CATATG 1 cut(s) 373
FblI GTMKAC 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 2 cut(s) 336, 341
Fsp4HI GCNGC 1 cut(s) 61
GluI GCNGC 1 cut(s) 61
HaeIII GGCC 2 cut(s) 54, 63
HapII CCGG 2 cut(s) 51, 83
HgaI GACGC 2 cut(s) 87, 428
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 2 cut(s) 261, 305
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 2 cut(s) 8, 35
HpaII CCGG 2 cut(s) 51, 83
Hpy166II GTNNAC 2 cut(s) 334, 380
Hpy188I TCNGA 4 cut(s) 34, 125, 153, 411
Hpy188III TCNNGA 2 cut(s) 205, 239
Hpy8I GTNNAC 2 cut(s) 334, 380
Hpy99I CGWCG 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 4 cut(s) 47, 341, 348, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 2 cut(s) 122, 312
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 2 cut(s) 261, 305
Kzo9I GATC 4 cut(s) 29, 118, 254, 406
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 8 cut(s) 55, 64, 68, 96, 98, 224, 243, 346
LweI GCATC 1 cut(s) 358
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 219
MalI GATC 4 cut(s) 31, 120, 256, 408
MbiI CCGCTC 1 cut(s) 60
MboI GATC 4 cut(s) 29, 118, 254, 406
MboII GAAGA 1 cut(s) 30
MflI RGATCY 1 cut(s) 118
MluCI AATT 2 cut(s) 176, 432
MlyI GAGTC 2 cut(s) 17, 44
MnlI CCTC 6 cut(s) 52, 184, 212, 273, 344, 398
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 280
MspI CCGG 2 cut(s) 51, 83
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 128
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 60
NciI CCSGG 1 cut(s) 83
NdeI CATATG 1 cut(s) 373
NdeII GATC 4 cut(s) 29, 118, 254, 406
NlaIII CATG 2 cut(s) 261, 305
NmuCI GTSAC 1 cut(s) 219
NsiI ATGCAT 1 cut(s) 373
PaeR7I CTCGAG 1 cut(s) 203
PctI GAATGC 1 cut(s) 128
PfoI TCCNGGA 1 cut(s) 81
PkrI GCNGC 1 cut(s) 62
PleI GAGTC 2 cut(s) 16, 43
PpsI GAGTC 2 cut(s) 16, 43
Ppu21I YACGTR 1 cut(s) 166
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 2 cut(s) 21, 164
RsaNI GTAC 2 cut(s) 20, 163
RseI CAYNNNNRTG 1 cut(s) 280
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 4 cut(s) 29, 118, 254, 406
SchI GAGTC 2 cut(s) 17, 44
ScrFI CCNGG 1 cut(s) 83
SetI ASST 5 cut(s) 168, 172, 198, 204, 390
SfaNI GCATC 1 cut(s) 358
SfiI GGCCNNNNNGGCC 1 cut(s) 60
Sfr274I CTCGAG 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SnaBI TACGTA 1 cut(s) 166
Sse9I AATT 2 cut(s) 176, 432
SsiI CCGC 3 cut(s) 60, 96, 116
StyD4I CCNGG 1 cut(s) 81
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 101, 204
TasI AATT 2 cut(s) 176, 432
TatI WGTACW 1 cut(s) 19
TauI GCSGC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TseFI GTSAC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 89
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 2 cut(s) 176, 432
XhoI CTCGAG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 379
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.