Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19184693 .. 19187780

Gene Structure 3088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG192800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGTTAGAAGTGATACAGGCATTGACGAACGAAACCATGGCACCACCAGCACCTACAAAGCGAGCATTTTGTATAGAAAGAACAGCGGTCATGACCAGTGGTATGGGAGGTGGTACGGGACCAGAAATCGAATCCCTGAATATGCAGCAACAAGTTCACAAGAAGATTCACCACGGCGGGCCCAAAATACCCTACTCTAGCAACCCCGCAACACAAGGGCAGCCAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

77

Amino Acids

8.2

Weight (kDa)

7.96

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AciI	CCGC	3 cut(s)	86, 177, 207
AfaI	GTAC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	179
ApaI	GGGCCC	1 cut(s)	183
ApeKI	GCWGC	2 cut(s)	145, 220
AspS9I	GGNCC	3 cut(s)	119, 179, 180
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	2 cut(s)	146, 221
BlsI	GCNGC	2 cut(s)	147, 222
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	119, 179, 180
BmiI	GGNNCC	3 cut(s)	42, 120, 181
BsaJI	CCNNGG	2 cut(s)	36, 172
Bse1I	ACTGG	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	36, 172
BseNI	ACTGG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	1 cut(s)	181
BshNI	GGYRCC	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	181
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	3 cut(s)	86, 177, 207
BspANI	GGCC	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	42, 120, 181
BspT107I	GGYRCC	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	36, 172
BssT1I	CCWWGG	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	63, 179
BstDSI	CCRYGG	2 cut(s)	36, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	181
BtgI	CCRYGG	2 cut(s)	36, 172
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	2 cut(s)	63, 179
CciI	TCATGA	1 cut(s)	90
Cfr13I	GGNCC	3 cut(s)	119, 179, 180
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	2 cut(s)	37, 91
CviJI	RGCY	2 cut(s)	181, 223
CviKI_1	RGCY	2 cut(s)	181, 223
CviQI	GTAC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	40, 94
FaiI	YATR	6 cut(s)	38, 74, 92, 104, 143, 232
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	2 cut(s)	36, 90
FauI	CCCGC	2 cut(s)	170, 214
Fnu4HI	GCNGC	2 cut(s)	146, 221
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	146, 221
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	2 cut(s)	146, 221
HaeIII	GGCC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	40, 94
HinfI	GANTC	2 cut(s)	131, 166
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	40, 94
LpnPI	CCDG	5 cut(s)	2, 60, 109, 135, 149
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	198
MboII	GAAGA	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	183
MnlI	CCTC	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	36
NlaIII	CATG	2 cut(s)	40, 94
NlaIV	GGNNCC	3 cut(s)	42, 120, 181
PagI	TCATGA	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	131, 166
PkrI	GCNGC	2 cut(s)	147, 222
PspN4I	GGNNCC	3 cut(s)	42, 120, 181
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	3 cut(s)	119, 179, 180
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SatI	GCNGC	2 cut(s)	146, 221
Sau96I	GGNCC	3 cut(s)	119, 179, 180
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	2 cut(s)	55, 112
SinI	GGWCC	1 cut(s)	119
SsiI	CCGC	3 cut(s)	86, 177, 207
SspMI	CTAG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	36
TaqI	TCGA	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	131, 166
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	2 cut(s)	145, 220
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	119
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.