Rh5CG218000
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
N/A
Physical Location & Seq
Forward (+)
22156913 .. 22161440
4528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG218000.1

Sequence Viewer

Length: 426 bp
ATGGCGGTTCACGATGATCCTACTCCGGGCTACAGGTTTAGTCCTGATGCAGAACTACTACTTGTTCATTACCTTCGTCCCAAACTCAATGGAGAAGGCTTTCCCCAAAGGCTTGTTCCTTTCTGCGATCTTTATGGAGATCAAGAACCATGGCAGATATGGGAAGCTACAAAAGCCGAACAATTGACAGTGGCACCTGGAAAGCTGACGACGGAGCCAAGAAAGTACTTGTTGCTTCTCGAAAGGTTATTGGCATTTGGCAAGAGAAAAAGATTTCATTACGAGTTTGAACTTGATGCATCTTTACTGCGAAACAAACGTAAAGGGAAGGACTATGTTCTTGTGGGTGTTGTTGAATCCTCCGTTCATCGTCATTCAAGTTTCTGGAAAACGTTTGGTTCCAAGATCGAAATAAGGTCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

16.46

Weight (kDa)

9.21

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 59 2.5e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AciI CCGC 1 cut(s) 5
AclI AACGTT 1 cut(s) 392
AclWI GGATC 1 cut(s) 11
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 3 cut(s) 290, 356, 378
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 2 cut(s) 167, 205
AluI AGCT 2 cut(s) 167, 205
AlwI GGATC 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 27
BanI GGYRCC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 198
BcnI CCSGG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 31
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 27, 198
BmiI GGNNCC 3 cut(s) 195, 216, 400
BmrFI CCNGG 2 cut(s) 27, 198
BmsI GCATC 3 cut(s) 37, 286, 308
BpuMI CCSGG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 193
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 63
Bsp143I GATC 4 cut(s) 16, 127, 139, 405
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 1 cut(s) 5
BspLI GGNNCC 3 cut(s) 195, 216, 400
BspPI GGATC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 4 cut(s) 16, 127, 139, 405
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 190
BstDSI CCRYGG 1 cut(s) 149
BstKTI GATC 4 cut(s) 19, 130, 142, 408
BstMBI GATC 4 cut(s) 16, 127, 139, 405
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 25, 196
BstSFI CTRYAG 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 195
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 150
CviJI RGCY 7 cut(s) 30, 99, 112, 167, 176, 205, 217
CviKI_1 RGCY 7 cut(s) 30, 99, 112, 167, 176, 205, 217
CviQI GTAC 1 cut(s) 226
DpnI GATC 4 cut(s) 18, 129, 141, 407
DpnII GATC 4 cut(s) 16, 127, 139, 405
Eco130I CCWWGG 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 1 cut(s) 153
FaiI YATR 4 cut(s) 135, 151, 160, 336
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 149
HapII CCGG 1 cut(s) 26
Hin1II CATG 1 cut(s) 153
HinfI GANTC 1 cut(s) 356
HpaII CCGG 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 10
Hpy188III TCNNGA 5 cut(s) 11, 44, 143, 239, 385
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 3 cut(s) 83, 89, 322
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 2 cut(s) 319, 392
HpyCH4V TGCA 2 cut(s) 50, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpySE526I ACGT 2 cut(s) 319, 392
Hsp92II CATG 1 cut(s) 153
Kzo9I GATC 4 cut(s) 16, 127, 139, 405
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 6 cut(s) 19, 39, 57, 183, 210, 370
LweI GCATC 3 cut(s) 37, 286, 308
MaeII ACGT 2 cut(s) 319, 392
MalI GATC 4 cut(s) 18, 129, 141, 407
MboI GATC 4 cut(s) 16, 127, 139, 405
MfeI CAATTG 1 cut(s) 182
MluCI AATT 1 cut(s) 182
MnlI CCTC 1 cut(s) 370
Mph1103I ATGCAT 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 99
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 27, 198
MunI CAATTG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 149
NdeII GATC 4 cut(s) 16, 127, 139, 405
NlaIII CATG 1 cut(s) 153
NlaIV GGNNCC 3 cut(s) 195, 216, 400
NsiI ATGCAT 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 356
Psp1406I AACGTT 1 cut(s) 392
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 3 cut(s) 195, 216, 400
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
Sau3AI GATC 4 cut(s) 16, 127, 139, 405
ScaI AGTACT 1 cut(s) 227
ScrFI CCNGG 2 cut(s) 27, 198
SetI ASST 9 cut(s) 38, 75, 169, 199, 207, 248, 322, 395, 419
SfaNI GCATC 3 cut(s) 37, 286, 308
SfcI CTRYAG 1 cut(s) 31
Sse9I AATT 1 cut(s) 182
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 2 cut(s) 25, 196
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 2 cut(s) 322, 395
TaqI TCGA 2 cut(s) 240, 408
TasI AATT 1 cut(s) 182
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 1 cut(s) 356
TscAI CASTG 1 cut(s) 195
TspDTI ATGAA 3 cut(s) 56, 266, 356
TspGWI ACGGA 2 cut(s) 227, 352
TspRI CASTG 1 cut(s) 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 99
ZrmI AGTACT 1 cut(s) 227
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.