Rh5CG218800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
N/A
Physical Location & Seq
Forward (+)
22239630 .. 22241021
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG218800.1

Sequence Viewer

Length: 264 bp
ATGAATACTTTATCTTTCATGAAGGATTTTCATCTTTCCACTTTTGATACTCTGTACCAATTGGAGCTGAGTCTTGGTGGTTGCAATAACTGGGAATTGCTAATAGTGTTTCTCAAGAAATCTCCAAATCTGAAACATCTCGTCTTAAAAAATAAGGGCCGTTTATCATATTTTGAATTAGATGAGCTTGAAAGTAATCTGTACGAATTTCATTACCTCACAACCAGTGCCCTCTACTCCAACGAACGTCCATTTGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

10.31

Weight (kDa)

5.5

Isoelectric Point (pI)

23.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 2 cut(s) 56, 203
AgsI TTSAA 2 cut(s) 176, 191
AluBI AGCT 2 cut(s) 67, 187
AluI AGCT 2 cut(s) 67, 187
AoxI GGCC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 232
BceAI ACGGC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 95, 225
Bse8I GATNNNNATC 1 cut(s) 30
BseJI GATNNNNATC 1 cut(s) 30
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 2 cut(s) 95, 225
BseSI GKGCMC 1 cut(s) 232
BshFI GGCC 1 cut(s) 159
BsnI GGCC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 232
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 60
BspHI TCATGA 1 cut(s) 18
BsrI ACTGG 2 cut(s) 95, 225
BstDEI CTNAG 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 232
CciI TCATGA 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 55, 202
CviAII CATG 1 cut(s) 19
CviJI RGCY 3 cut(s) 67, 159, 187
CviKI_1 RGCY 3 cut(s) 67, 159, 187
CviQI GTAC 2 cut(s) 55, 202
DdeI CTNAG 1 cut(s) 68
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 169
FatI CATG 1 cut(s) 18
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 1 cut(s) 22
HinfI GANTC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 19, 115
HpyAV CCTTC 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 1 cut(s) 22
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 2 cut(s) 76, 238
MaeII ACGT 1 cut(s) 247
MfeI CAATTG 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 4 cut(s) 59, 95, 176, 206
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 2 cut(s) 227, 242
MseI TTAA 1 cut(s) 146
MunI CAATTG 1 cut(s) 59
NlaIII CATG 1 cut(s) 22
PagI TCATGA 1 cut(s) 18
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 157
RsaI GTAC 2 cut(s) 56, 203
RsaNI GTAC 2 cut(s) 55, 202
SaqAI TTAA 1 cut(s) 146
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 79
SduI GDGCHC 1 cut(s) 232
SetI ASST 4 cut(s) 69, 189, 219, 250
SgeI CNNG 7 cut(s) 31, 86, 103, 127, 152, 200, 237
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 4 cut(s) 59, 95, 176, 206
TaiI ACGT 1 cut(s) 250
TasI AATT 4 cut(s) 59, 95, 176, 206
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 1 cut(s) 232
TspDTI ATGAA 5 cut(s) 7, 17, 20, 35, 200
TspRI CASTG 1 cut(s) 232
XapI RAATTY 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.