Rh5CG236900
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
N/A
Physical Location & Seq
Reverse (-)
24597548 .. 24599534
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG236900.1

Sequence Viewer

Length: 285 bp
ATGGTGCCAGCTTCCGTCCATTATGAGGGAGGTGTGAATGAAGAGGAGGTACCCGGAAAAGAAGCCCTTATTTGCGAGTTGGATCTTTATGGTGAGCAAGAACCTTGGAATATATGGGAGAGATATGAAGAAAGAAGGGCAAACGACTTGAGAAGGAACAAAGATCTCTACTTCTTTACCAAAAAGAAGAAGGTGAGTGCAAAAGCCTCGCGTATAAGGAGAAAAGTTGGGAGTGGTACATGGAAAGGCCAGGACGCAGCCAAGGAGATTTATCTTCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

94

Amino Acids

11.01

Weight (kDa)

7.81

Isoelectric Point (pI)

63.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 90 2.5e-10 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 49
AccB1I GGYRCC 2 cut(s) 4, 49
AccII CGCG 1 cut(s) 211
AclWI GGATC 1 cut(s) 90
AfaI GTAC 2 cut(s) 51, 238
AfiI CCNNNNNNNGG 1 cut(s) 25
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwI GGATC 1 cut(s) 90
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 257
Asp718I GGTACC 1 cut(s) 49
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 104, 205
BanI GGYRCC 2 cut(s) 4, 49
BarI GAAGNNNNNNTAC 2 cut(s) 33, 65
BbvI GCAGC 1 cut(s) 269
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciT130I CCWGG 1 cut(s) 251
BcnI CCSGG 1 cut(s) 54
BglII AGATCT 1 cut(s) 163
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 2 cut(s) 54, 251
BmiI GGNNCC 2 cut(s) 6, 51
BmrFI CCNGG 2 cut(s) 54, 251
BpuEI CTTGAG 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 104, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 104, 261
BseLI CCNNNNNNNGG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 1 cut(s) 249
BshNI GGYRCC 2 cut(s) 4, 49
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 25
BsnI GGCC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 82, 163
BspANI GGCC 1 cut(s) 249
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 6, 51
BspPI GGATC 1 cut(s) 90
BspT107I GGYRCC 2 cut(s) 4, 49
BssECI CCNNGG 2 cut(s) 104, 261
BssMI GATC 2 cut(s) 82, 163
BssT1I CCWWGG 2 cut(s) 104, 261
Bst2UI CCWGG 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 9
BstFNI CGCG 1 cut(s) 211
BstKTI GATC 2 cut(s) 85, 166
BstMBI GATC 2 cut(s) 82, 163
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 52, 249
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 269
BstX2I RGATCY 2 cut(s) 82, 163
BstYI RGATCY 2 cut(s) 82, 163
BsuRI GGCC 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 9
CseI GACGC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 50, 237
CviAII CATG 1 cut(s) 240
CviJI RGCY 5 cut(s) 11, 65, 206, 249, 260
CviKI_1 RGCY 5 cut(s) 11, 65, 206, 249, 260
CviQI GTAC 2 cut(s) 50, 237
DpnI GATC 2 cut(s) 84, 165
DpnII GATC 2 cut(s) 82, 163
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 104, 261
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 2 cut(s) 104, 261
ErhI CCWWGG 2 cut(s) 104, 261
FaeI CATG 1 cut(s) 243
FaiI YATR 7 cut(s) 24, 90, 113, 115, 126, 215, 241
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 1 cut(s) 239
Fnu4HI GCNGC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 1 cut(s) 249
HapII CCGG 1 cut(s) 54
HgaI GACGC 1 cut(s) 263
Hin1II CATG 1 cut(s) 243
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 104, 205
Hpy188III TCNNGA 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 129, 147, 184
HpyCH4V TGCA 1 cut(s) 200
Hsp92II CATG 1 cut(s) 243
KpnI GGTACC 1 cut(s) 53
Kzo9I GATC 2 cut(s) 82, 163
LpnPI CCDG 4 cut(s) 21, 67, 236, 263
Lsp1109I GCAGC 1 cut(s) 269
MalI GATC 2 cut(s) 84, 165
MboI GATC 2 cut(s) 82, 163
MboII GAAGA 4 cut(s) 53, 140, 199, 266
MflI RGATCY 2 cut(s) 82, 163
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 5 cut(s) 19, 23, 37, 40, 217
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 54, 251
MvaI CCWGG 1 cut(s) 251
MvnI CGCG 1 cut(s) 211
NciI CCSGG 1 cut(s) 54
NdeII GATC 2 cut(s) 82, 163
NlaIII CATG 1 cut(s) 243
NlaIV GGNNCC 2 cut(s) 6, 51
PkrI GCNGC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 6, 51
PsuI RGATCY 2 cut(s) 82, 163
RsaI GTAC 2 cut(s) 51, 238
RsaNI GTAC 2 cut(s) 50, 237
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 82, 163
ScrFI CCNGG 2 cut(s) 54, 251
SetI ASST 5 cut(s) 13, 34, 51, 106, 195
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
StyD4I CCNGG 2 cut(s) 52, 249
StyI CCWWGG 2 cut(s) 104, 261
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 54, 141
TspGWI ACGGA 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.