Rh5CG241000
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
N/A
Physical Location & Seq
Forward (+)
25049948 .. 25053507
3560 bp
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UTR
Exon/CDS
Intron
Rh5CG241000.1

Sequence Viewer

Length: 237 bp
ATGGCTTGTTTCTCTTGCTTGTTCAGCCAGAAGGCAGCTTCTTCAGTTAAACAGACTGTTGACATTGATGAAGTTGTTTCAGGTATTTCAAATCTCAAACTGTACAGTTACAAGGAACTGCAAAATGCCACTGAAAATTTCAGTGAAGACAATAAAATTGGTCAGGGAGGCTTTGGCTCCGTATACAAGGGAACACTCAAGGATGGCTCTGTGGCAGCAATAAAGAGCTCAGATTGA

Protein Analysis

78

Amino Acids

8.31

Weight (kDa)

5.25

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 183
AcsI RAATTY 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 1 cut(s) 104
AgsI TTSAA 1 cut(s) 90
AluBI AGCT 2 cut(s) 38, 228
AluI AGCT 2 cut(s) 38, 228
Alw21I GWGCWC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 35, 215
ApoI RAATTY 1 cut(s) 136
BanII GRGCYC 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 2 cut(s) 47, 227
BccI CCATC 1 cut(s) 197
BisI GCNGC 2 cut(s) 36, 216
BlsI GCNGC 2 cut(s) 37, 217
BmiI GGNNCC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 182
BseGI GGATG 1 cut(s) 208
BseXI GCAGC 2 cut(s) 47, 227
BsiHKAI GWGCWC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 230
Bsp1407I TGTACA 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 178
BsrGI TGTACA 1 cut(s) 102
BssNAI GTATAC 1 cut(s) 184
Bst1107I GTATAC 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 58, 102, 107
BstAUI TGTACA 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 47, 227
BstV2I GAAGAC 1 cut(s) 153
BstZ17I GTATAC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 129, 148
Csp6I GTAC 1 cut(s) 103
CviJI RGCY 7 cut(s) 5, 27, 38, 171, 177, 207, 228
CviKI_1 RGCY 7 cut(s) 5, 27, 38, 171, 177, 207, 228
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 229
Ecl136II GAGCTC 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 230
Eco53kI GAGCTC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 230
FaiI YATR 1 cut(s) 184
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 36, 216
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 2 cut(s) 36, 216
GluI GCNGC 2 cut(s) 36, 216
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 61, 184
Hpy188I TCNGA 1 cut(s) 232
Hpy8I GTNNAC 2 cut(s) 61, 184
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 3 cut(s) 58, 102, 107
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 229
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 3 cut(s) 41, 66, 149
Lsp1109I GCAGC 2 cut(s) 47, 227
MaeIII GTNAC 1 cut(s) 107
MboII GAAGA 2 cut(s) 33, 158
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 2 cut(s) 136, 156
MnlI CCTC 1 cut(s) 161
MseI TTAA 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 37, 217
Psp124BI GAGCTC 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 178
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SacI GAGCTC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 2 cut(s) 36, 216
SduI GDGCHC 1 cut(s) 230
SetI ASST 3 cut(s) 40, 85, 230
SgeI CNNG 9 cut(s) 18, 27, 31, 40, 93, 124, 176, 199, 211
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 136, 156
SstI GAGCTC 1 cut(s) 230
TaaI ACNGT 3 cut(s) 58, 102, 107
TasI AATT 2 cut(s) 136, 156
TatI WGTACW 1 cut(s) 102
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 136, 148
TseI GCWGC 2 cut(s) 35, 215
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 2 cut(s) 136, 148
XapI RAATTY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.