Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25227275 .. 25240944

Gene Structure 13670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG242900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 851 bp

ATGAAATCTACTCCACCACCACGACCACCAAGGGACGAGGCCCTCATCCCCTTGCACAATCTCAAAACTTCTTATTTGGTGAAAGTGCCAGAGCTGAAGCTGAGCCATCATCAAAAGTACACTCAAAACTTGTGTGATGGGTTAGCCTGGCGACAGAGCTGGTTTCAGAAATCCCAGAACACCAGCTGGAGATCATCATCATCATCATCAACATCAGAAAAAGCATTAGGCAAATTGAGAGCTGGGAAAGTAGAAATTCAGAAACCCAATAAGCAAAAGTTGATTCTTGTTGTAGCTAAAAATAAGTCTAGGTCTAGTACTACTCCTCCCGCTGCTGCTACTGTTCCATTAAAAGCTGGAAAAGGAAACTCACAGACCCATCACGAAAATGAGCAAGCTTTTCTTACACCAAACCATCTCGGGTTTGATAGCTCCGCCGCCACGTGGACAGAGCACCACCAGCAGCAGCAGCAGCAGGCGGAGCTCAACAGGTTCCAGAGAATGGTGGCTTGGAACAATGCGGGTGGTGATAGCAACAACAACAACAACAACAGCAGCGGTGGTGGAGTTGAGTTTACATTCAACTCGCAACCGCAGACTCAATCGCAGTCGCCGACTCTGCAGCCGTTCTTGTTCGGCCAAAACCAGTTCTTTTCTTCACAGAGGGGACCCCTTCAGTCCATCTTCCATTTCCGGCATGGGATTTGCCTCCGGCGGATTCTCCGGCTTCCACATTCCGGCACGAATCCAGGGCGAGGAGGAGCACGACGGCATCTCAGACAAGCCGTCCTCTGCTTCCTCCAATTCTCGCCATTGAATCGAAACACTGAACTTCTCTCTCACTCTCAAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

283

Amino Acids

31.73

Weight (kDa)

10.73

Isoelectric Point (pI)

62.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	502
AciI	CCGC	8 cut(s)	330, 435, 438, 479, 521, 558, 593, 715
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	2 cut(s)	116, 659
AcvI	CACGTG	1 cut(s)	444
AfaI	GTAC	2 cut(s)	119, 319
AfiI	CCNNNNNNNGG	4 cut(s)	444, 502, 737, 755
AgsI	TTSAA	2 cut(s)	583, 817
AhdI	GACNNNNNGTC	1 cut(s)	785
AjnI	CCWGG	2 cut(s)	146, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	493, 525
Alw21I	GWGCWC	3 cut(s)	456, 486, 766
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	39, 637
ApeKI	GCWGC	8 cut(s)	332, 335, 463, 466, 469, 472, 555, 622
ApoI	RAATTY	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	40, 668
AsuHPI	GGTGA	2 cut(s)	91, 539
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	486
BbrPI	CACGTG	1 cut(s)	444
Bbv12I	GWGCWC	3 cut(s)	456, 486, 766
BbvI	GCAGC	8 cut(s)	319, 322, 475, 478, 481, 484, 567, 634
BccI	CCATC	5 cut(s)	114, 131, 387, 423, 689
BceAI	ACGGC	3 cut(s)	610, 770, 785
BciT130I	CCWGG	2 cut(s)	148, 750
BfaI	CTAG	2 cut(s)	309, 315
BfmI	CTRYAG	1 cut(s)	620
BisI	GCNGC	9 cut(s)	333, 336, 438, 464, 467, 470, 473, 556, 623
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	9 cut(s)	334, 337, 439, 465, 468, 471, 474, 557, 624
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	148, 750
Bme18I	GGWCC	1 cut(s)	668
BmeRI	GACNNNNNGTC	1 cut(s)	785
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	40, 668
BmiI	GGNNCC	3 cut(s)	494, 669, 670
BmrFI	CCNGG	2 cut(s)	148, 750
BmsI	GCATC	1 cut(s)	781
BpmI	CTGGAG	1 cut(s)	208
Bpu1102I	GCTNAGC	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	29, 749
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	4 cut(s)	444, 502, 737, 755
Bse1I	ACTGG	1 cut(s)	646
Bse8I	GATNNNNATC	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	148, 750
BseDI	CCNNGG	2 cut(s)	29, 749
BseGI	GGATG	1 cut(s)	45
BseJI	GATNNNNATC	1 cut(s)	196
BseLI	CCNNNNNNNGG	4 cut(s)	444, 502, 737, 755
BseMII	CTCAG	2 cut(s)	92, 790
BseNI	ACTGG	1 cut(s)	646
BseRI	GAGGAG	3 cut(s)	315, 771, 774
BseXI	GCAGC	8 cut(s)	319, 322, 475, 478, 481, 484, 567, 634
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	2 cut(s)	41, 639
BsiHKAI	GWGCWC	3 cut(s)	456, 486, 766
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	4 cut(s)	694, 712, 724, 738
BslFI	GGGAC	2 cut(s)	47, 681
BslI	CCNNNNNNNGG	4 cut(s)	444, 502, 737, 755
BsmFI	GGGAC	2 cut(s)	47, 681
BsnI	GGCC	2 cut(s)	41, 639
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	3 cut(s)	456, 486, 766
Bsp143I	GATC	1 cut(s)	191
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	8 cut(s)	330, 435, 438, 479, 521, 558, 593, 715
BspANI	GGCC	2 cut(s)	41, 639
BspCNI	CTCAG	2 cut(s)	93, 789
BspLI	GGNNCC	3 cut(s)	494, 669, 670
BspMAI	CTGCAG	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	646
BssECI	CCNNGG	2 cut(s)	29, 749
BssMI	GATC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	148, 750
Bst4CI	ACNGT	1 cut(s)	343
BstBAI	YACGTR	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	396, 477
BstDEI	CTNAG	2 cut(s)	101, 776
BstF5I	GGATG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	5 cut(s)	460, 469, 472, 481, 619
BstNI	CCWGG	2 cut(s)	148, 750
BstSCI	CCNGG	2 cut(s)	146, 748
BstSFI	CTRYAG	1 cut(s)	620
BstV1I	GCAGC	8 cut(s)	319, 322, 475, 478, 481, 484, 567, 634
BsuRI	GGCC	2 cut(s)	41, 639
BtsCI	GGATG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	825
Cac8I	GCNNGC	2 cut(s)	396, 477
Cfr13I	GGNCC	2 cut(s)	40, 668
Csp6I	GTAC	2 cut(s)	118, 318
CspCI	CAANNNNNGTGG	2 cut(s)	505, 540
CviAII	CATG	1 cut(s)	698
CviQI	GTAC	2 cut(s)	118, 318
DdeI	CTNAG	2 cut(s)	101, 776
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
DriI	GACNNNNNGTC	1 cut(s)	785
EaeI	YGGCCR	1 cut(s)	637
Eam1105I	GACNNNNNGTC	1 cut(s)	785
EciI	GGCGGA	3 cut(s)	424, 494, 730
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	668
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	2 cut(s)	116, 659
Eco72I	CACGTG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	484
EcoO109I	RGGNCCY	2 cut(s)	40, 668
EcoRII	CCWGG	2 cut(s)	146, 748
EcoT14I	CCWWGG	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	1 cut(s)	701
FaiI	YATR	1 cut(s)	699
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	2 cut(s)	47, 681
FatI	CATG	1 cut(s)	697
FauI	CCCGC	2 cut(s)	337, 514
Fnu4HI	GCNGC	9 cut(s)	333, 336, 438, 464, 467, 470, 473, 556, 623
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	9 cut(s)	333, 336, 438, 464, 467, 470, 473, 556, 623
FspBI	CTAG	2 cut(s)	309, 315
GluI	GCNGC	9 cut(s)	333, 336, 438, 464, 467, 470, 473, 556, 623
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	41, 639
HapII	CCGG	4 cut(s)	694, 712, 724, 738
Hin1II	CATG	1 cut(s)	701
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	6 cut(s)	283, 598, 616, 718, 745, 817
HpaII	CCGG	4 cut(s)	694, 712, 724, 738
HphI	GGTGA	2 cut(s)	91, 539
Hpy166II	GTNNAC	3 cut(s)	120, 447, 576
Hpy188I	TCNGA	4 cut(s)	168, 217, 261, 779
Hpy188III	TCNNGA	2 cut(s)	383, 496
Hpy8I	GTNNAC	3 cut(s)	120, 447, 576
Hpy99I	CGWCG	1 cut(s)	771
HpyAV	CCTTC	1 cut(s)	683
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	2 cut(s)	55, 622
HpyF10VI	GCNNNNNNNGC	5 cut(s)	460, 469, 472, 481, 619
HpyF3I	CTNAG	2 cut(s)	101, 776
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	1 cut(s)	701
KflI	GGGWCCC	1 cut(s)	668
Kzo9I	GATC	1 cut(s)	191
LmnI	GCTCC	3 cut(s)	437, 481, 761
Lsp1109I	GCAGC	8 cut(s)	319, 322, 475, 478, 481, 484, 567, 634
LweI	GCATC	1 cut(s)	781
MaeI	CTAG	2 cut(s)	309, 315
MaeII	ACGT	1 cut(s)	443
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	2 cut(s)	648, 676
MhlI	GDGCHC	3 cut(s)	456, 486, 766
MluCI	AATT	3 cut(s)	233, 255, 803
MlyI	GAGTC	2 cut(s)	592, 610
MnlI	CCTC	9 cut(s)	31, 53, 336, 657, 719, 749, 752, 800, 809
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	3 cut(s)	186, 332, 558
MspI	CCGG	4 cut(s)	694, 712, 724, 738
MspR9I	CCNGG	2 cut(s)	148, 750
MvaI	CCWGG	2 cut(s)	148, 750
MwoI	GCNNNNNNNGC	5 cut(s)	460, 469, 472, 481, 619
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	1 cut(s)	701
NlaIV	GGNNCC	3 cut(s)	494, 669, 670
PcsI	WCGNNNNNNNCGW	1 cut(s)	611
PfeI	GAWTC	4 cut(s)	283, 718, 745, 817
PflMI	CCANNNNNTGG	1 cut(s)	502
PkrI	GCNGC	9 cut(s)	334, 337, 439, 465, 468, 471, 474, 557, 624
PleI	GAGTC	2 cut(s)	592, 610
PmaCI	CACGTG	1 cut(s)	444
PmlI	CACGTG	1 cut(s)	444
PpsI	GAGTC	2 cut(s)	592, 610
Ppu21I	YACGTR	1 cut(s)	444
PpuMI	RGGWCCY	1 cut(s)	668
Psp124BI	GAGCTC	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	2 cut(s)	146, 748
PspCI	CACGTG	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	2 cut(s)	146, 748
PspN4I	GGNNCC	3 cut(s)	494, 669, 670
PspPI	GGNCC	2 cut(s)	40, 668
PspPPI	RGGWCCY	1 cut(s)	668
PstI	CTGCAG	1 cut(s)	624
PvuII	CAGCTG	1 cut(s)	186
RsaI	GTAC	2 cut(s)	119, 319
RsaNI	GTAC	2 cut(s)	118, 318
RseI	CAYNNNNRTG	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	9 cut(s)	333, 336, 438, 464, 467, 470, 473, 556, 623
Sau3AI	GATC	1 cut(s)	191
Sau96I	GGNCC	2 cut(s)	40, 668
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	2 cut(s)	592, 610
ScrFI	CCNGG	2 cut(s)	148, 750
SduI	GDGCHC	3 cut(s)	456, 486, 766
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	1 cut(s)	620
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	387
Sse9I	AATT	3 cut(s)	233, 255, 803
SsiI	CCGC	8 cut(s)	330, 435, 438, 479, 521, 558, 593, 715
SspMI	CTAG	2 cut(s)	309, 315
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	146, 748
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	1 cut(s)	820
TasI	AATT	3 cut(s)	233, 255, 803
TatI	WGTACW	2 cut(s)	117, 317
TauI	GCSGC	1 cut(s)	440
TfiI	GAWTC	4 cut(s)	283, 718, 745, 817
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	1 cut(s)	832
TseI	GCWGC	8 cut(s)	332, 335, 463, 466, 469, 472, 555, 622
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	832
Van91I	CCANNNNNTGG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	668
XapI	RAATTY	1 cut(s)	255
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XspI	CTAG	2 cut(s)	309, 315
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.