Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

26526684 .. 26529253

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG251800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAGTGTTGGTCGAGCCTTCTACCGTGAACCCTTCCTCCTTTGGGACTATGCCACAGAGAAAATGGCGGATTTCTCCACAAGTTTTACATTCGCCATCATCAGTACAGACGAGACAGCACCCTCCTGCGGTGCTGGGTTTGTGTTCTTCCTAGCACCATATGGAACGATACTCTACAGCTCATTAGGAGCTGGAGCCAGTCTTGGCCTCCCCATCAACAGCACACAGCAAAACGTCACCGTCCCGAAGAGTCAGTACCCATTTGTGGCAGTGGAGTTTGATATCTACCCGAATACACTTCCACCCGTAGACGATCCCCGCTATCAACACGTTGGCATCGACGTCAACTCTATCAGGTCTAGTAAAACCGCTCCTTGGAATCATGCTACACTTTCATCTTATAACTATCTTCAAGGAGATGAAGTCAATACTGCGTGGTGCTTGCCGGATGTGGTCATTGTTGGGTTCTCTGCGGCAACGGGGAATCAAACTGCAATGCATAAGATCATCTCTTGGAATTTTACTTCTACTTCTTTGGAGATTCCTCCGCCAATCCCCGCCTACTCTAATTTGGCGGGTTCGTCTGGTGGAAGGAAAGGGAAACCAGAGAGAGTGATAGAGATGACAATGCTTGAATTATATTATAATCGGATGCATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

220

Amino Acids

24.22

Weight (kDa)

5.51

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	2 - 134	7.5e-30	Legume lectin domain
Lectin_legB	PF00139	142 - 178	3.4e-07	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	402, 645
AatII	GACGTC	1 cut(s)	345
AccBSI	CCGCTC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	8 cut(s)	68, 129, 319, 369, 473, 548, 558, 575
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	1 cut(s)	517
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	2 cut(s)	106, 257
AfiI	CCNNNNNNNGG	4 cut(s)	43, 128, 265, 375
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	413, 635
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	2 cut(s)	180, 191
AluI	AGCT	2 cut(s)	180, 191
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	229
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
BccI	CCATC	2 cut(s)	104, 221
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	152, 360
BfmI	CTRYAG	1 cut(s)	175
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	196
BmsI	GCATC	2 cut(s)	345, 642
BpmI	CTGGAG	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	374
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 408, 438
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 128, 265, 375
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	2 cut(s)	454, 657
BseLI	CCNNNNNNNGG	4 cut(s)	43, 128, 265, 375
BseMI	GCAATG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	198
BseYI	CCCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	446
BslFI	GGGAC	2 cut(s)	59, 227
BslI	CCNNNNNNNGG	4 cut(s)	43, 128, 265, 375
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	59, 227
BsnI	GGCC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	313, 504
BspACI	CCGC	8 cut(s)	68, 129, 319, 369, 473, 548, 558, 575
BspANI	GGCC	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	2 cut(s)	313, 504
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	26, 241
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	454, 657
BstKTI	GATC	2 cut(s)	316, 507
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	313, 504
BstSFI	CTRYAG	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	454, 657
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	105, 256
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	5 cut(s)	17, 180, 191, 197, 207
CviKI_1	RGCY	5 cut(s)	17, 180, 191, 197, 207
CviQI	GTAC	2 cut(s)	105, 256
DpnI	GATC	2 cut(s)	315, 506
DpnII	GATC	2 cut(s)	313, 504
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	2 cut(s)	83, 537
Eco130I	CCWWGG	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	374
EcoT22I	ATGCAT	2 cut(s)	501, 657
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	1 cut(s)	386
FaiI	YATR	9 cut(s)	51, 160, 162, 384, 402, 501, 640, 645, 657
FaqI	GGGAC	2 cut(s)	59, 227
FatI	CATG	1 cut(s)	382
FauI	CCCGC	3 cut(s)	326, 565, 568
FauNDI	CATATG	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	2 cut(s)	152, 360
GluI	GCNGC	1 cut(s)	474
GsaI	CCCAGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	4 cut(s)	250, 379, 484, 541
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	3 cut(s)	29, 310, 346
Hpy188I	TCNGA	1 cut(s)	651
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	3 cut(s)	29, 310, 346
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	3 cut(s)	28, 43, 585
HpyCH4III	ACNGT	2 cut(s)	26, 241
HpyCH4IV	ACGT	3 cut(s)	234, 330, 342
HpyCH4V	TGCA	3 cut(s)	494, 499, 655
HpySE526I	ACGT	3 cut(s)	234, 330, 342
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	313, 504
LmnI	GCTCC	3 cut(s)	188, 194, 376
LpnPI	CCDG	8 cut(s)	120, 139, 177, 211, 340, 459, 570, 618
LweI	GCATC	2 cut(s)	345, 642
MaeI	CTAG	2 cut(s)	152, 360
MaeII	ACGT	3 cut(s)	234, 330, 342
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	2 cut(s)	315, 506
MbiI	CCGCTC	1 cut(s)	371
MboI	GATC	2 cut(s)	313, 504
MboII	GAAGA	3 cut(s)	139, 259, 401
MluCI	AATT	3 cut(s)	517, 568, 635
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	4 cut(s)	47, 133, 218, 555
Mph1103I	ATGCAT	2 cut(s)	501, 657
MspI	CCGG	1 cut(s)	446
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	2 cut(s)	313, 504
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	235
NsiI	ATGCAT	2 cut(s)	501, 657
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	379, 484, 541
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PsiI	TTATAA	2 cut(s)	402, 645
PspFI	CCCAGC	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	196
RsaI	GTAC	2 cut(s)	106, 257
RsaNI	GTAC	2 cut(s)	105, 256
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	2 cut(s)	313, 504
SchI	GAGTC	1 cut(s)	259
SetI	ASST	6 cut(s)	182, 193, 237, 333, 345, 359
SfaNI	GCATC	2 cut(s)	345, 642
SfcI	CTRYAG	1 cut(s)	175
Sse9I	AATT	3 cut(s)	517, 568, 635
SsiI	CCGC	8 cut(s)	68, 129, 319, 369, 473, 548, 558, 575
SspMI	CTAG	2 cut(s)	152, 360
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	2 cut(s)	26, 241
TaiI	ACGT	3 cut(s)	237, 333, 345
TaqI	TCGA	2 cut(s)	13, 339
TasI	AATT	3 cut(s)	517, 568, 635
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	3 cut(s)	379, 484, 541
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	384, 435
TspRI	CASTG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	2 cut(s)	152, 360
ZraI	GACGTC	1 cut(s)	343
Zsp2I	ATGCAT	2 cut(s)	501, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.