Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

26786640 .. 26787313

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG253500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCAGTTACCAACGATATATTTATGGAGGGAGATGCTTTCCCCGATGGATCCCTCCGCCTCACCAAAATCGCCGTCGACGTTCAAAAGAACCAAAGCGTCGGCTGAGCCACCTACCACCAACCCTTCCTCCTCCGCCAAAACTCCACCGGAAAACTCGCCGACTTCACCTCAAACTTCACATTTGTCATCGACTCTCTCGAAAAAACATCCTACGGCGACGGTCTTGCCTTCATCATCGCGCCAAATGGGTCCTTACTTAACTCCACAATCGAAAGAGGTTCATTTCACGATGGATTTGGATCAGTACTTGCCGGATTTGGTCATCGTTGGGTTCTCGGGCGCAACAGGTGCACTGACTGCTCACTGCTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

125

Amino Acids

13.39

Weight (kDa)

8.82

Isoelectric Point (pI)

56.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	1 cut(s)	241
AciI	CCGC	2 cut(s)	57, 135
AclWI	GGATC	3 cut(s)	44, 57, 309
AfaI	GTAC	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	85
Alw21I	GWGCWC	1 cut(s)	355
Alw44I	GTGCAC	1 cut(s)	351
AlwI	GGATC	3 cut(s)	44, 57, 309
Ama87I	CYCGRG	1 cut(s)	337
ApaLI	GTGCAC	1 cut(s)	351
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	2 cut(s)	243, 344
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	54, 159
AvaI	CYCGRG	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	355
BamHI	GGATCC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	355
BccI	CCATC	2 cut(s)	40, 286
BceAI	ACGGC	2 cut(s)	58, 231
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BlpI	GCTNAGC	1 cut(s)	105
BmcAI	AGTACT	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	51, 252
BmsI	GCATC	1 cut(s)	24
Bpu1102I	GCTNAGC	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bse8I	GATNNNNATC	1 cut(s)	300
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	2 cut(s)	149, 314
BsoBI	CYCGRG	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	49, 301
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	2 cut(s)	57, 135
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	51, 252
BspPI	GGATC	3 cut(s)	44, 57, 309
BssMI	GATC	2 cut(s)	49, 301
Bst4CI	ACNGT	1 cut(s)	223
BstAPI	GCANNNNNTGC	2 cut(s)	350, 359
BstDEI	CTNAG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	241
BstHHI	GCGC	2 cut(s)	243, 344
BstKTI	GATC	2 cut(s)	52, 304
BstMBI	GATC	2 cut(s)	49, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 359
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	353, 364
CfoI	GCGC	2 cut(s)	243, 344
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	307
CviJI	RGCY	2 cut(s)	104, 109
CviKI_1	RGCY	2 cut(s)	104, 109
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	2 cut(s)	51, 303
DpnII	GATC	2 cut(s)	49, 301
EciI	GGCGGA	2 cut(s)	46, 124
Eco47I	GGWCC	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	251
FaiI	YATR	3 cut(s)	19, 25, 376
FblI	GTMKAC	1 cut(s)	77
FokI	GGATG	1 cut(s)	195
GlaI	GCGC	2 cut(s)	242, 343
HapII	CCGG	2 cut(s)	149, 314
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	2 cut(s)	243, 344
Hin6I	GCGC	2 cut(s)	241, 342
HinP1I	GCGC	2 cut(s)	241, 342
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	2 cut(s)	149, 314
HphI	GGTGA	2 cut(s)	54, 159
Hpy166II	GTNNAC	2 cut(s)	78, 353
Hpy188III	TCNNGA	2 cut(s)	199, 289
Hpy8I	GTNNAC	2 cut(s)	78, 353
Hpy99I	CGWCG	4 cut(s)	79, 82, 103, 223
HpyAV	CCTTC	2 cut(s)	135, 240
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	3 cut(s)	4, 353, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 359
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	80
HspAI	GCGC	2 cut(s)	241, 342
Kzo9I	GATC	2 cut(s)	49, 301
LpnPI	CCDG	3 cut(s)	162, 327, 333
LweI	GCATC	1 cut(s)	24
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	2 cut(s)	51, 303
MboI	GATC	2 cut(s)	49, 301
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	7 cut(s)	21, 64, 70, 139, 142, 180, 271
MseI	TTAA	1 cut(s)	260
MspI	CCGG	2 cut(s)	149, 314
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	350, 359
NdeII	GATC	2 cut(s)	49, 301
NlaIV	GGNNCC	2 cut(s)	51, 252
PcsI	WCGNNNNNNNCGW	2 cut(s)	77, 197
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	51, 252
PspPI	GGNCC	1 cut(s)	251
PspPPI	RGGWCCY	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SalI	GTCGAC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	260
Sau3AI	GATC	2 cut(s)	49, 301
Sau96I	GGNCC	1 cut(s)	251
ScaI	AGTACT	1 cut(s)	308
SchI	GAGTC	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	5 cut(s)	83, 115, 172, 282, 352
SfaNI	GCATC	1 cut(s)	24
SgrDI	CGTCGACG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	251
SsiI	CCGC	2 cut(s)	57, 135
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	4 cut(s)	77, 191, 200, 272
TatI	WGTACW	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	2 cut(s)	360, 371
TspDTI	ATGAA	2 cut(s)	222, 272
TspRI	CASTG	2 cut(s)	360, 371
VneI	GTGCAC	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	77
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.