Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

30699953 .. 30702426

Gene Structure 2474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG281600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCAGATTGGTCACATGGCTGTGTACGAAAGACTCCATTAGAGTGCCGGGATGGACAGGGCTTTCTAAAATATTCTGGCATTAAATTGCCGGATACACAGCATTCCTGGTATAACAGGACAATGAACCTCAAAGAATGTCAGCAGGTTTGCTTGAAGAACTGCAATTGCACAGCTTATGCTAATTTGGATATTAGAGGAGAAGGAAGTGGGTGCATTCTCTGGCTTGGAAAACTGATTGATACTCGAGAATTCTCTGATGCTGGGCAGGACATATATATTAGGATGGCTGCCTCTGAGCTAGTGACATACAGACGCTTGAAGGGAAAAACAAAAGTTAAGGTCATAGTTGTATCTTTACTAGCTGTGGGGATAACTCTTCTAGGCCTATGCTTGATACTACATTTATACAAGAGGAAGAAGAAGAAGGAAAAAAAGCAGATTAAGAGAAAATTAGGTAACTTATTTCTATCTGTACTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

161

Amino Acids

18.39

Weight (kDa)

9.68

Isoelectric Point (pI)

22.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAN_2	PF08276	16 - 82	9.4e-23	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	2 cut(s)	27, 477
AgsI	TTSAA	2 cut(s)	157, 322
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	3 cut(s)	176, 301, 365
AluI	AGCT	3 cut(s)	176, 301, 365
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	2 cut(s)	47, 280
BciT130I	CCWGG	1 cut(s)	109
BciVI	GTATCC	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	3 cut(s)	302, 362, 383
BfuAI	ACCTGC	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	50, 109
BmeT110I	CYCGRG	1 cut(s)	246
BmrFI	CCNGG	2 cut(s)	50, 109
BmsI	GCATC	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	58, 291
BseMII	CTCAG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	277
BseYI	CCCAGC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	49, 92
BsmI	GAATGC	2 cut(s)	103, 216
BsnI	GGCC	1 cut(s)	387
BsoBI	CYCGRG	1 cut(s)	246
BspANI	GGCC	1 cut(s)	387
BspCNI	CTCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	384
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	58, 291
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	2 cut(s)	48, 107
BstV1I	GCAGC	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	58, 291
BveI	ACCTGC	1 cut(s)	136
CseI	GACGC	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	26, 476
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	8 cut(s)	21, 63, 176, 226, 290, 301, 365, 387
CviKI_1	RGCY	8 cut(s)	21, 63, 176, 226, 290, 301, 365, 387
CviQI	GTAC	2 cut(s)	26, 476
DdeI	CTNAG	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	107
FaeI	CATG	1 cut(s)	20
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	2 cut(s)	65, 298
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	3 cut(s)	302, 362, 383
GluI	GCNGC	1 cut(s)	291
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	2 cut(s)	49, 92
HgaI	GACGC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	20
HinfI	GANTC	1 cut(s)	34
HpaII	CCGG	2 cut(s)	49, 92
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	259, 298
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	197, 316, 421
HpyCH4V	TGCA	3 cut(s)	165, 171, 216
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	20
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	3 cut(s)	302, 362, 383
MaeIII	GTNAC	3 cut(s)	12, 304, 458
MboII	GAAGA	5 cut(s)	169, 371, 430, 433, 436
MfeI	CAATTG	1 cut(s)	166
MluCI	AATT	5 cut(s)	86, 166, 184, 251, 452
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	4 cut(s)	140, 191, 304, 408
MseI	TTAA	3 cut(s)	84, 339, 444
MslI	CAYNNNNRTG	2 cut(s)	21, 43
MspI	CCGG	2 cut(s)	49, 92
MspR9I	CCNGG	2 cut(s)	50, 109
MunI	CAATTG	1 cut(s)	166
Mva1269I	GAATGC	2 cut(s)	103, 216
MvaI	CCWGG	1 cut(s)	109
NciI	CCSGG	1 cut(s)	50
NlaIII	CATG	1 cut(s)	20
NmuCI	GTSAC	2 cut(s)	12, 304
PaeR7I	CTCGAG	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	387
PctI	GAATGC	2 cut(s)	103, 216
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	107
RsaI	GTAC	2 cut(s)	27, 477
RsaNI	GTAC	2 cut(s)	26, 476
RseI	CAYNNNNRTG	2 cut(s)	21, 43
SaqAI	TTAA	3 cut(s)	84, 339, 444
SatI	GCNGC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	50, 109
SetI	ASST	7 cut(s)	132, 150, 178, 303, 345, 367, 460
SfaNI	GCATC	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	2 cut(s)	21, 43
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	5 cut(s)	86, 166, 184, 251, 452
SseBI	AGGCCT	1 cut(s)	387
SspI	AATATT	1 cut(s)	74
SspMI	CTAG	3 cut(s)	302, 362, 383
StuI	AGGCCT	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	48, 107
TaqI	TCGA	1 cut(s)	247
TasI	AATT	5 cut(s)	86, 166, 184, 251, 452
TatI	WGTACW	1 cut(s)	475
Tru1I	TTAA	3 cut(s)	84, 339, 444
Tru9I	TTAA	3 cut(s)	84, 339, 444
TseFI	GTSAC	2 cut(s)	12, 304
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	2 cut(s)	12, 304
TspDTI	ATGAA	1 cut(s)	140
XapI	RAATTY	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	246
XspI	CTAG	3 cut(s)	302, 362, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.