Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

35860832 .. 35861164

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG324100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGACCGAAAGGCTTTACTCCGAGGTTCGGTTGCTGAAGTCCCTGAAGAACAAAAACATCATTGCTTTGCATAACGTGTGGAGAGACGGAGAGAAAAACATTCTGAATTTCATGACTGAGGTTTGTACCAGTGGTAATCTGAGGGAGTACAGGAAGAAGCACAAGAACGTTTCGATGAAGGCCTTGAAGAAGTGGTCGTTTCAGATCTTGAAAGGGTTGGAGTATTTGCATACGCATGAGCCCTGTGTGATTCATAGAGATTCTCAATTGCAGCAATGTGTTTGTCAATGGGAATCTTGGCCAGGTACTCATGTTATTGGAAACAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

110

Amino Acids

13.02

Weight (kDa)

9.54

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 87	1.2e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 94	1.2e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	2 cut(s)	56, 65
AfaI	GTAC	3 cut(s)	127, 149, 307
AfiI	CCNNNNNNNGG	1 cut(s)	27
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	187, 211
AjnI	CCWGG	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	78
AoxI	GGCC	2 cut(s)	180, 299
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	106
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
BalI	TGGCCA	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	78
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	2 cut(s)	60, 281
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMI	GCAATG	2 cut(s)	60, 281
BseMII	CTCAG	2 cut(s)	108, 131
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	2 cut(s)	182, 301
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	78
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	182, 301
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	182, 301
BspCNI	CTCAG	2 cut(s)	109, 132
BspHI	TCATGA	1 cut(s)	111
BsrDI	GCAATG	2 cut(s)	60, 281
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	117, 140
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	204
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	182, 301
BtsIMutI	CAGTG	1 cut(s)	136
CciI	TCATGA	1 cut(s)	111
Csp6I	GTAC	3 cut(s)	126, 148, 306
CviAII	CATG	3 cut(s)	112, 236, 311
CviJI	RGCY	4 cut(s)	13, 182, 241, 301
CviKI_1	RGCY	4 cut(s)	13, 182, 241, 301
CviQI	GTAC	3 cut(s)	126, 148, 306
DdeI	CTNAG	2 cut(s)	117, 140
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	299
Eco147I	AGGCCT	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	56, 65
EcoRII	CCWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	3 cut(s)	115, 239, 314
FaiI	YATR	6 cut(s)	72, 113, 231, 237, 255, 312
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	3 cut(s)	111, 235, 310
Fnu4HI	GCNGC	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	182, 301
Hin1II	CATG	3 cut(s)	115, 239, 314
HinfI	GANTC	3 cut(s)	250, 260, 293
Hpy188I	TCNGA	4 cut(s)	22, 105, 141, 204
Hpy188III	TCNNGA	2 cut(s)	112, 208
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	2 cut(s)	75, 168
HpyCH4V	TGCA	3 cut(s)	70, 229, 271
HpyF3I	CTNAG	2 cut(s)	117, 140
HpySE526I	ACGT	2 cut(s)	75, 168
Hsp92II	CATG	3 cut(s)	115, 239, 314
Kzo9I	GATC	1 cut(s)	204
LpnPI	CCDG	6 cut(s)	56, 136, 142, 256, 288, 315
Lsp1109I	GCAGC	1 cut(s)	283
MaeII	ACGT	2 cut(s)	75, 168
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	3 cut(s)	58, 166, 199
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	301
MluCI	AATT	2 cut(s)	106, 266
MluNI	TGGCCA	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	3 cut(s)	16, 112, 135
Mox20I	TGGCCA	1 cut(s)	301
MscI	TGGCCA	1 cut(s)	301
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	303
MunI	CAATTG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	303
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	3 cut(s)	115, 239, 314
PagI	TCATGA	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	182
PfeI	GAWTC	3 cut(s)	250, 260, 293
PkrI	GCNGC	1 cut(s)	273
Psp1406I	AACGTT	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	3 cut(s)	127, 149, 307
RsaNI	GTAC	3 cut(s)	126, 148, 306
RseI	CAYNNNNRTG	1 cut(s)	234
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	5 cut(s)	27, 78, 123, 171, 307
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	2 cut(s)	106, 266
SseBI	AGGCCT	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	2 cut(s)	78, 171
TaqI	TCGA	1 cut(s)	173
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	106, 266
TatI	WGTACW	1 cut(s)	147
TfiI	GAWTC	3 cut(s)	250, 260, 293
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	271
TspDTI	ATGAA	3 cut(s)	100, 191, 242
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.