Rh5CG340600

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
N/A
Physical Location & Seq
Reverse (-)
39039889 .. 39041139
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG340600.1

Sequence Viewer

Length: 867 bp
ATGAATGAAACCAATGCAGTTGCAAGAATAACAGTGAATGATTCTACCTTAGAGCGCCTTATATGGGATGGTGGTGGCCTTCAATGGAAGGAAGATTTCTCTGCACCGAAGTCCCGGTGTGACAGGTACAGACAGTGTGGTGCCAACAGCAGATGTAGCCCTGATAATGTTAATCTGTTTGAGTGTGACTGTTTGCCAGGGTATGTGCCTAATTCTATAAGTGATTGGAATCAGAAAAATGGTTCAGGTGGATGTGTGAGTAATCGACTTGGTTTGTTGAAGTGTGGAGATGGAGACGAGTTTATAAAGGTGGCAAGAGTTAAATATCCAGACACATCGATAGCAGCATCATTAAAATCAGGTATGAGTGGCAAAGAATGTGCGCAGGAGTGCCTAAGAAATTGTTCTTACACTGCATATTTGAGCGATGAAAATGAAGGGATTGTTGATTGCTTGACATGGTATGATGACTTGATGGACATTTTAGTGTACACAGAGATTGGACGAGATCTCTATGTTCGTGTGAATGCAACTGTCTTAGCGGCAAATGCCAGAAGATCACAAGGTTTCTGGGAAAGGAGGGGTATGCTGGCTATTCCAATACTGTGCACTGCGCTAGCATTGGTACTAATCATTATGCTTGCATGGAAGTGGCGTAAGAAGAACAAGAACACAAGAGGCATAGACTTTGTGGAGGCAGAGGAGCTTGAGGAAACTCAGAGACACCCCGAATTGCAATTTTTCGATCTTGACACAATAACAGCAGCCACAGACCACTTCTCTCATGGCAATGAACTTGGCCGCGGTGGCTATGGCTCTGTTTATAAGGTTCTGGCATGGCTGCTTTTTTTCACTATTCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

288

Amino Acids

32.37

Weight (kDa)

5.27

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 4 - 71 7.1e-12 S-locus glycoprotein domain
PAN_2 PF08276 95 - 161 7.5e-15 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 305, 825
Acc16I TGCGCA 1 cut(s) 384
AccB1I GGYRCC 1 cut(s) 140
AccII CGCG 1 cut(s) 804
AciI CCGC 3 cut(s) 542, 802, 804
AcoI YGGCCR 1 cut(s) 799
AfaI GTAC 3 cut(s) 128, 491, 627
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 83, 280
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 1 cut(s) 706
AluI AGCT 1 cut(s) 706
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 2 cut(s) 288, 715
Alw44I GTGCAC 1 cut(s) 607
AoxI GGCC 2 cut(s) 76, 799
ApaLI GTGCAC 1 cut(s) 607
ApeKI GCWGC 3 cut(s) 344, 764, 841
Asp700I GAANNNNTTC 1 cut(s) 403
AspLEI GCGC 3 cut(s) 57, 385, 616
AsuC2I CCSGG 1 cut(s) 115
AsuNHI GCTAGC 1 cut(s) 616
BaeGI GKGCMC 1 cut(s) 611
BanI GGYRCC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 3 cut(s) 356, 776, 828
BccI CCATC 3 cut(s) 62, 284, 469
BciT130I CCWGG 1 cut(s) 198
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 288, 715
BfaI CTAG 1 cut(s) 617
BfoI RGCGCY 1 cut(s) 58
BglI GCCNNNNNGGC 1 cut(s) 807
BglII AGATCT 1 cut(s) 508
BisI GCNGC 5 cut(s) 345, 543, 765, 802, 842
BlsI GCNGC 5 cut(s) 346, 544, 766, 803, 843
Bme1390I CCNGG 2 cut(s) 115, 198
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 2 cut(s) 115, 198
BmsI GCATC 1 cut(s) 356
BmtI GCTAGC 1 cut(s) 620
BpuEI CTTGAG 1 cut(s) 728
BpuMI CCSGG 1 cut(s) 115
Bsa29I ATCGAT 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 197, 802
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 796
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 1 cut(s) 198
BseCI ATCGAT 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 197, 802
BseGI GGATG 2 cut(s) 73, 257
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 796
BseMII CTCAG 1 cut(s) 731
BseRI GAGGAG 1 cut(s) 716
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 3 cut(s) 356, 776, 828
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 804
BshFI GGCC 2 cut(s) 78, 801
BshNI GGYRCC 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 611
BsiSI CCGG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 288, 715
BsmBI CGTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 2 cut(s) 78, 801
Bsp1286I GDGCHC 1 cut(s) 611
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 3 cut(s) 508, 557, 745
BspACI CCGC 3 cut(s) 542, 802, 804
BspANI GGCC 2 cut(s) 78, 801
BspCNI CTCAG 1 cut(s) 730
BspDI ATCGAT 1 cut(s) 338
BspFNI CGCG 1 cut(s) 804
BspLI GGNNCC 1 cut(s) 142
BspOI GCTAGC 1 cut(s) 620
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 796
BsrGI TGTACA 1 cut(s) 489
BssECI CCNNGG 2 cut(s) 197, 802
BssMI GATC 3 cut(s) 508, 557, 745
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 5 cut(s) 34, 135, 191, 535, 606
BstAUI TGTACA 1 cut(s) 489
BstC8I GCNNGC 3 cut(s) 591, 618, 642
BstDEI CTNAG 4 cut(s) 49, 395, 538, 717
BstDSI CCRYGG 1 cut(s) 802
BstF5I GGATG 2 cut(s) 73, 257
BstFNI CGCG 1 cut(s) 804
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 3 cut(s) 57, 385, 616
BstKTI GATC 3 cut(s) 511, 560, 748
BstMAI GTCTC 2 cut(s) 288, 715
BstMBI GATC 3 cut(s) 508, 557, 745
BstMWI GCNNNNNNNGC 3 cut(s) 156, 548, 807
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 113, 196
BstSLI GKGCMC 1 cut(s) 611
BstUI CGCG 1 cut(s) 804
BstV1I GCAGC 3 cut(s) 356, 776, 828
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
Bsu15I ATCGAT 1 cut(s) 338
BsuRI GGCC 2 cut(s) 78, 801
BsuTUI ATCGAT 1 cut(s) 338
BtgI CCRYGG 1 cut(s) 802
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 73, 257
BtsI GCAGTG 2 cut(s) 411, 609
BtsIMutI CAGTG 4 cut(s) 39, 140, 411, 609
Cac8I GCNNGC 3 cut(s) 591, 618, 642
CfoI GCGC 3 cut(s) 57, 385, 616
Cfr42I CCGCGG 1 cut(s) 805
ClaI ATCGAT 1 cut(s) 338
Csp6I GTAC 3 cut(s) 127, 490, 626
CviAII CATG 4 cut(s) 459, 645, 785, 837
CviJI RGCY 9 cut(s) 78, 159, 593, 706, 767, 801, 810, 816, 841
CviKI_1 RGCY 9 cut(s) 78, 159, 593, 706, 767, 801, 810, 816, 841
CviQI GTAC 3 cut(s) 127, 490, 626
DdeI CTNAG 4 cut(s) 49, 395, 538, 717
DpnI GATC 3 cut(s) 510, 559, 747
DpnII GATC 3 cut(s) 508, 557, 745
EaeI YGGCCR 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 4 cut(s) 462, 648, 788, 840
FaqI GGGAC 1 cut(s) 97
FatI CATG 4 cut(s) 458, 644, 784, 836
Fnu4HI GCNGC 5 cut(s) 345, 543, 765, 802, 842
FokI GGATG 2 cut(s) 80, 264
Fsp4HI GCNGC 5 cut(s) 345, 543, 765, 802, 842
FspBI CTAG 1 cut(s) 617
FspI TGCGCA 1 cut(s) 384
GlaI GCGC 3 cut(s) 56, 384, 615
GluI GCNGC 5 cut(s) 345, 543, 765, 802, 842
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 2 cut(s) 78, 801
HapII CCGG 1 cut(s) 115
HhaI GCGC 3 cut(s) 57, 385, 616
Hin1II CATG 4 cut(s) 462, 648, 788, 840
Hin6I GCGC 3 cut(s) 55, 383, 614
HinP1I GCGC 3 cut(s) 55, 383, 614
HinfI GANTC 2 cut(s) 41, 229
HpaII CCGG 1 cut(s) 115
Hpy166II GTNNAC 3 cut(s) 490, 492, 609
Hpy188I TCNGA 2 cut(s) 234, 720
Hpy188III TCNNGA 2 cut(s) 329, 749
Hpy8I GTNNAC 3 cut(s) 490, 492, 609
HpyAV CCTTC 3 cut(s) 82, 89, 431
HpyCH4III ACNGT 5 cut(s) 34, 135, 191, 535, 606
HpyCH4V TGCA 8 cut(s) 17, 23, 104, 416, 530, 609, 644, 736
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 548, 807
HpyF3I CTNAG 4 cut(s) 49, 395, 538, 717
Hsp92II CATG 4 cut(s) 462, 648, 788, 840
HspAI GCGC 3 cut(s) 55, 383, 614
KspI CCGCGG 1 cut(s) 805
Kzo9I GATC 3 cut(s) 508, 557, 745
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 3 cut(s) 356, 776, 828
LweI GCATC 1 cut(s) 356
MaeI CTAG 1 cut(s) 617
MaeIII GTNAC 2 cut(s) 119, 185
MalI GATC 3 cut(s) 510, 559, 747
MboI GATC 3 cut(s) 508, 557, 745
MboII GAAGA 3 cut(s) 104, 567, 673
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 611
MluCI AATT 5 cut(s) 211, 400, 731, 737, 862
MnlI CCTC 5 cut(s) 573, 671, 688, 694, 703
MroXI GAANNNNTTC 1 cut(s) 403
MseI TTAA 4 cut(s) 171, 321, 353, 861
MslI CAYNNNNRTG 3 cut(s) 485, 649, 789
MspA1I CMGCKG 1 cut(s) 804
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 2 cut(s) 115, 198
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 1 cut(s) 198
MvnI CGCG 1 cut(s) 804
MwoI GCNNNNNNNGC 3 cut(s) 156, 548, 807
NciI CCSGG 1 cut(s) 115
NdeII GATC 3 cut(s) 508, 557, 745
NheI GCTAGC 1 cut(s) 616
NlaIII CATG 4 cut(s) 462, 648, 788, 840
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 119, 185
NsbI TGCGCA 1 cut(s) 384
PctI GAATGC 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 403
PfeI GAWTC 2 cut(s) 41, 229
PkrI GCNGC 5 cut(s) 346, 544, 766, 803, 843
PsiI TTATAA 2 cut(s) 305, 825
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 508
RsaI GTAC 3 cut(s) 128, 491, 627
RsaNI GTAC 3 cut(s) 127, 490, 626
RseI CAYNNNNRTG 3 cut(s) 485, 649, 789
SacII CCGCGG 1 cut(s) 805
SaqAI TTAA 4 cut(s) 171, 321, 353, 861
SatI GCNGC 5 cut(s) 345, 543, 765, 802, 842
Sau3AI GATC 3 cut(s) 508, 557, 745
ScrFI CCNGG 2 cut(s) 115, 198
SduI GDGCHC 1 cut(s) 611
SetI ASST 8 cut(s) 50, 128, 250, 312, 364, 568, 708, 831
SfaNI GCATC 1 cut(s) 356
Sfr303I CCGCGG 1 cut(s) 805
SgrBI CCGCGG 1 cut(s) 805
SmiMI CAYNNNNRTG 3 cut(s) 485, 649, 789
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
Sse9I AATT 5 cut(s) 211, 400, 731, 737, 862
SsiI CCGC 3 cut(s) 542, 802, 804
SspMI CTAG 1 cut(s) 617
StyD4I CCNGG 2 cut(s) 113, 196
TaaI ACNGT 5 cut(s) 34, 135, 191, 535, 606
TaqI TCGA 3 cut(s) 265, 338, 744
TasI AATT 5 cut(s) 211, 400, 731, 737, 862
TatI WGTACW 1 cut(s) 489
TauI GCSGC 2 cut(s) 545, 804
TfiI GAWTC 2 cut(s) 41, 229
Tru1I TTAA 4 cut(s) 171, 321, 353, 861
Tru9I TTAA 4 cut(s) 171, 321, 353, 861
TscAI CASTG 4 cut(s) 39, 140, 418, 616
TseFI GTSAC 2 cut(s) 119, 185
TseI GCWGC 3 cut(s) 344, 764, 841
Tsp45I GTSAC 2 cut(s) 119, 185
TspDTI ATGAA 5 cut(s) 17, 21, 444, 450, 807
TspRI CASTG 4 cut(s) 39, 140, 418, 616
VneI GTGCAC 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 782
XmnI GAANNNNTTC 1 cut(s) 403
XspI CTAG 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.