Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

67950064 .. 67950348

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG487100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGATCCAAGGCTACGGAGAAGTGCGGCATCAACCATGGCAATGGAGAAAATCCTCAAGCTAGCTCACGAGTGCCTTGCACCTTTAAGACAATCAAGACCCTCCATGAAAAAATGTGCTGAAGTATTATGGGGGATTCGCAAGGAATTCAGAGAGAAAGCCTTCCCTGCTCCTCCTTCAACTTCTCACTACTCTGACACTTTTCCTGTGAGAGATGCTAAGGTGACTAGGCAGCAGACTTTTGGAATTGAAGATGGTGATAGCTATAAATTTATCTCAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0050896 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

94

Amino Acids

10.72

Weight (kDa)

9.69

Isoelectric Point (pI)

76.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	146, 269
AcuI	CTGAAG	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	180, 251
AluBI	AGCT	3 cut(s)	61, 65, 264
AluI	AGCT	3 cut(s)	61, 65, 264
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	2 cut(s)	146, 269
Asp700I	GAANNNNTTC	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	235, 269
AsuNHI	GCTAGC	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	248
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BfaI	CTAG	2 cut(s)	62, 228
BisI	GCNGC	2 cut(s)	27, 233
BlsI	GCNGC	2 cut(s)	28, 234
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	38, 205
BmtI	GCTAGC	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	8, 36
Bse3DI	GCAATG	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	8, 36
BseMI	GCAATG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	4
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	65
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	8, 36
BssMI	GATC	1 cut(s)	4
BssSI	CACGAG	1 cut(s)	68
BssT1I	CCWWGG	2 cut(s)	8, 36
Bst2BI	CACGAG	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	2 cut(s)	219, 277
BstDSI	CCRYGG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	4
BtgI	CCRYGG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	63
CviAII	CATG	2 cut(s)	37, 106
CviJI	RGCY	5 cut(s)	13, 61, 65, 161, 264
CviKI_1	RGCY	5 cut(s)	13, 61, 65, 161, 264
DdeI	CTNAG	2 cut(s)	219, 277
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco130I	CCWWGG	2 cut(s)	8, 36
Eco57I	CTGAAG	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	8, 36
ErhI	CCWWGG	2 cut(s)	8, 36
FaeI	CATG	2 cut(s)	40, 109
FaiI	YATR	4 cut(s)	38, 107, 130, 267
FatI	CATG	2 cut(s)	36, 105
Fnu4HI	GCNGC	2 cut(s)	27, 233
Fsp4HI	GCNGC	2 cut(s)	27, 233
FspBI	CTAG	2 cut(s)	62, 228
GluI	GCNGC	2 cut(s)	27, 233
Hin1II	CATG	2 cut(s)	40, 109
HinfI	GANTC	1 cut(s)	136
HphI	GGTGA	2 cut(s)	235, 269
Hpy188I	TCNGA	2 cut(s)	152, 196
Hpy188III	TCNNGA	2 cut(s)	68, 96
HpyAV	CCTTC	2 cut(s)	172, 186
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	219, 277
Hsp92II	CATG	2 cut(s)	40, 109
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	2 cut(s)	180, 219
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	2 cut(s)	38, 205
MaeI	CTAG	2 cut(s)	62, 228
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	263
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	3 cut(s)	146, 246, 269
MnlI	CCTC	3 cut(s)	65, 112, 183
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	4
NheI	GCTAGC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	40, 109
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	28, 234
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	2 cut(s)	27, 233
Sau3AI	GATC	1 cut(s)	4
SetI	ASST	5 cut(s)	63, 67, 85, 225, 266
SfaNI	GCATC	2 cut(s)	38, 205
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	3 cut(s)	146, 246, 269
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	2 cut(s)	62, 228
StyI	CCWWGG	2 cut(s)	8, 36
TasI	AATT	3 cut(s)	146, 246, 269
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	31
XapI	RAATTY	2 cut(s)	146, 269
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	2 cut(s)	62, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.