Rh5DG082000

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Forward (+)
7187783 .. 7195881
8099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG082000.1

Sequence Viewer

Length: 471 bp
ATGAGATTAGGTCTAGCTTGTTCCGCAGAATCACCGGAAGTGAGGATGAATATGCAAGAGGCTCTAGCCACGCTGAACAAGATCAAGATCAAGTTTTTGAAGGACGCTGCCGGAGGTGTGAGGTCTGCTTTCGTGGGAGCAGAGAGGTGTATGAAACCTTTTGTGAAAGCCAGGATGATGGGTACCCATCCCGTCTATGCATTCAGATATTATTTTGAAGAATCGTGGAGCCAAGTTCGAATTGGTGGTGAAAAGAAATCCACTTTTTATAATCTCATGCAAGACAAGTTTTACGATGATTATCCATGTATAATCATCATTGGAATGGGAATGCCAGAGATGGCGGATTTGAGCCCAGAAGAGATTAGAGAAGTAGATAATCTTTTGAAAGAAGATTTTGTGAAAGAGAATTGGAGGTTGGTTGAGGAGCTGGAACATATGATAAAGACGAAGAAAAAAAGCAAATCTTAA

Protein Analysis

156

Amino Acids

18.08

Weight (kDa)

8.36

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 270
Acc65I GGTACC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 2 cut(s) 24, 344
AfaI GTAC 1 cut(s) 184
AgsI TTSAA 3 cut(s) 100, 218, 388
AjnI CCWGG 1 cut(s) 170
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 2 cut(s) 17, 430
AluI AGCT 2 cut(s) 17, 430
ApeKI GCWGC 1 cut(s) 107
Asp718I GGTACC 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 24, 260
AsuII TTCGAA 1 cut(s) 238
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 94
BccI CCATC 3 cut(s) 172, 195, 334
BciT130I CCWGG 1 cut(s) 172
BfaI CTAG 2 cut(s) 14, 65
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 172
BmiI GGNNCC 2 cut(s) 184, 230
BmrFI CCNGG 1 cut(s) 172
Bpu14I TTCGAA 1 cut(s) 238
BsaBI GATNNNNATC 2 cut(s) 86, 300
BsaWI WCCGGW 1 cut(s) 34
Bse8I GATNNNNATC 2 cut(s) 86, 300
BseBI CCWGG 1 cut(s) 172
BseGI GGATG 3 cut(s) 51, 180, 187
BseJI GATNNNNATC 2 cut(s) 86, 300
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 1 cut(s) 94
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 2 cut(s) 35, 111
BsmI GAATGC 2 cut(s) 200, 336
Bsp119I TTCGAA 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 2 cut(s) 81, 87
BspACI CCGC 2 cut(s) 24, 344
BspLI GGNNCC 2 cut(s) 184, 230
BspT104I TTCGAA 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 182
BssMI GATC 2 cut(s) 81, 87
Bst2UI CCWGG 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 354
BstBI TTCGAA 1 cut(s) 238
BstF5I GGATG 3 cut(s) 51, 180, 187
BstKTI GATC 2 cut(s) 84, 90
BstMBI GATC 2 cut(s) 81, 87
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 178
BtsCI GGATG 3 cut(s) 51, 180, 187
CseI GACGC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 183
CviAII CATG 2 cut(s) 277, 306
CviJI RGCY 7 cut(s) 17, 62, 68, 170, 231, 354, 430
CviKI_1 RGCY 7 cut(s) 17, 62, 68, 170, 231, 354, 430
CviQI GTAC 1 cut(s) 183
DpnI GATC 2 cut(s) 83, 89
DpnII GATC 2 cut(s) 81, 87
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
EciI GGCGGA 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 356
FaeI CATG 2 cut(s) 280, 309
FaiI YATR 9 cut(s) 53, 152, 198, 270, 278, 307, 311, 438, 440
FalI AAGNNNNNCTT 1 cut(s) 451
FatI CATG 2 cut(s) 276, 305
FauNDI CATATG 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 3 cut(s) 58, 174, 187
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 2 cut(s) 14, 65
GluI GCNGC 1 cut(s) 108
HapII CCGG 2 cut(s) 35, 111
HgaI GACGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 280, 309
HinfI GANTC 2 cut(s) 29, 221
HpaII CCGG 2 cut(s) 35, 111
HphI GGTGA 2 cut(s) 24, 260
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 94
HpyCH4V TGCA 3 cut(s) 55, 200, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 2 cut(s) 280, 309
KpnI GGTACC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 81, 87
LmnI GCTCC 3 cut(s) 137, 228, 427
LpnPI CCDG 7 cut(s) 48, 124, 157, 184, 348, 369, 416
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 2 cut(s) 14, 65
MalI GATC 2 cut(s) 83, 89
MboI GATC 2 cut(s) 81, 87
MboII GAAGA 4 cut(s) 230, 371, 404, 463
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 2 cut(s) 240, 409
MnlI CCTC 7 cut(s) 36, 52, 107, 114, 138, 408, 418
Mph1103I ATGCAT 1 cut(s) 202
MseI TTAA 1 cut(s) 469
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 2 cut(s) 35, 111
MspR9I CCNGG 1 cut(s) 172
Mva1269I GAATGC 2 cut(s) 200, 336
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeI CATATG 1 cut(s) 438
NdeII GATC 2 cut(s) 81, 87
NlaIII CATG 2 cut(s) 280, 309
NlaIV GGNNCC 2 cut(s) 184, 230
NsiI ATGCAT 1 cut(s) 202
NspV TTCGAA 1 cut(s) 238
PctI GAATGC 2 cut(s) 200, 336
PfeI GAWTC 2 cut(s) 29, 221
PkrI GCNGC 1 cut(s) 109
PsiI TTATAA 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 184, 230
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 1 cut(s) 469
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 2 cut(s) 81, 87
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 1 cut(s) 356
SetI ASST 8 cut(s) 13, 19, 118, 125, 149, 160, 419, 432
SfuI TTCGAA 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 2 cut(s) 240, 409
SsiI CCGC 2 cut(s) 24, 344
SspMI CTAG 2 cut(s) 14, 65
StyD4I CCNGG 1 cut(s) 170
TaqI TCGA 1 cut(s) 238
TasI AATT 2 cut(s) 240, 409
TfiI GAWTC 2 cut(s) 29, 221
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 62, 167
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XspI CTAG 2 cut(s) 14, 65
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.