Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10219765 .. 10226189

Gene Structure 6425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG112300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAAGTTAATTAGACATCCCAATGTAATCCGTATGTATGAGGTGATGGCTAGCAAGACAAAAATATACATCGTTTTGGAGTTTGTGACTGGTGGAGAACTATTTGACAAAATTGCAAGTAAAGGAAGATTGAAAGAAGATGAAGCAAGGAAGTATTTTCAGCAGCTTATAAATGCAGTGGATTACTGCCATAGCAGAGGTGTTTTCCATAGAGACCTGAAGCCCGAGAATTTGCTGCTGGATGCTAATGGAGTGCTTAAAGTTTCAGATTTTGGGCTCAGTGCGCTTCCTCAGCAAGTTCGAGAAGATGGATTACTTCACACAACATGTGGGACACCAAATTATGTTGCCCCTGAGGTCATCAACAACAAAGGGTATGATGGAGCAAAGGCTGATCTATGGTCTTGTGGTGTGATTCTTTATGTCTTGATGGCTGGCTATCTGCCTTTTGAAGATTCCAATCTCATGTCATTATATAAAAAGATATTCAAGGCTGAGTTCTCATGTCCTCCATGGTTCTCCTCAAGTGCAAAGAAGCTAATTAAGAGAATCTTGGACCCTAACCCCTTGACACGAATTACAATTGCTGAGGTGATTGAGAATGAGTGGTTCAAGAAAGGGTATAAAGCACCTAATTTTGAACAAGTTGATGTTAGTCTCGATGATGTGGATGCGATATTCAATGATTCAGGGGATACCCAGAACCTTGTAGTTGAGAGGCGAGAGGAAAGACATGTGCCTGTTACCATGAATGCCTTTGAGCTTATCTCTACATCTCAGGGCCTGAATCTCAATAGTCTTTTTGAGAAACAGATGGTAGGATTAATTTTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007154 GO:0007165 GO:0007584 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009536 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0010107 GO:0010118 GO:0015672 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030001 GO:0031667 GO:0034220 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071704 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

278

Amino Acids

31.56

Weight (kDa)

6.25

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 204	3.4e-63	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 200	3.6e-31	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	40 - 154	7.6e-07	Kinase-like
NAF	PF03822	247 - 271	1.3e-08	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	239
AflIII	ACRYGT	2 cut(s)	326, 733
AgsI	TTSAA	7 cut(s)	133, 452, 490, 613, 641, 682, 832
AluBI	AGCT	3 cut(s)	166, 538, 763
AluI	AGCT	3 cut(s)	166, 538, 763
Alw26I	GTCTC	2 cut(s)	207, 662
AlwNI	CAGNNNCTG	1 cut(s)	784
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	781
ApeKI	GCWGC	2 cut(s)	163, 235
ApoI	RAATTY	1 cut(s)	229
AseI	ATTAAT	1 cut(s)	824
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	556, 781
AsuHPI	GGTGA	2 cut(s)	55, 604
AsuNHI	GCTAGC	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	556
AxyI	CCTNAGG	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	279
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
BbvCI	CCTCAGC	2 cut(s)	291, 588
BbvI	GCAGC	2 cut(s)	175, 222
BccI	CCATC	5 cut(s)	40, 302, 374, 424, 808
BciVI	GTATCC	1 cut(s)	688
BcoDI	GTCTC	2 cut(s)	207, 662
BfaI	CTAG	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	688
BisI	GCNGC	2 cut(s)	164, 236
BlsI	GCNGC	2 cut(s)	165, 237
Bme18I	GGWCC	1 cut(s)	556
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	556, 781
BmiI	GGNNCC	1 cut(s)	558
BmsI	GCATC	2 cut(s)	232, 661
BmtI	GCTAGC	1 cut(s)	54
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
Bpu10I	CCTNAGC	2 cut(s)	291, 588
BpuEI	CTTGAG	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	94
Bse21I	CCTNAGG	1 cut(s)	354
Bse8I	GATNNNNATC	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	3 cut(s)	16, 247, 676
BseJI	GATNNNNATC	1 cut(s)	459
BseMII	CTCAG	6 cut(s)	292, 305, 345, 486, 579, 791
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	511
BseXI	GCAGC	2 cut(s)	175, 222
BshFI	GGCC	1 cut(s)	783
BsiHKCI	CYCGRG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	346
BsmAI	GTCTC	2 cut(s)	207, 662
BsmFI	GGGAC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	1 cut(s)	783
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	394
Bsp19I	CCATGG	1 cut(s)	512
BspANI	GGCC	1 cut(s)	783
BspCNI	CTCAG	6 cut(s)	291, 304, 346, 487, 580, 790
BspLI	GGNNCC	1 cut(s)	558
BspOI	GCTAGC	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	1 cut(s)	394
BssT1I	CCWWGG	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	52, 436
BstDEI	CTNAG	6 cut(s)	278, 291, 354, 495, 588, 777
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	3 cut(s)	16, 247, 676
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	2 cut(s)	207, 662
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 292
BstNSI	RCATGY	2 cut(s)	330, 737
BstV1I	GCAGC	2 cut(s)	175, 222
Bsu36I	CCTNAGG	1 cut(s)	354
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	1 cut(s)	783
BtgI	CCRYGG	1 cut(s)	512
BtsCI	GGATG	3 cut(s)	16, 247, 676
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 286
Cac8I	GCNNGC	2 cut(s)	52, 436
CaiI	CAGNNNCTG	1 cut(s)	784
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	556, 781
CviAII	CATG	6 cut(s)	327, 466, 504, 513, 734, 748
DdeI	CTNAG	6 cut(s)	278, 291, 354, 495, 588, 777
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	239
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	781
EcoT14I	CCWWGG	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	6 cut(s)	330, 469, 507, 516, 737, 751
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	6 cut(s)	326, 465, 503, 512, 733, 747
Fnu4HI	GCNGC	2 cut(s)	164, 236
FokI	GGATG	3 cut(s)	3, 254, 683
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	2 cut(s)	164, 236
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	2 cut(s)	164, 236
HaeIII	GGCC	1 cut(s)	783
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	6 cut(s)	330, 469, 507, 516, 737, 751
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	5 cut(s)	415, 455, 549, 686, 787
HphI	GGTGA	2 cut(s)	55, 604
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	4 cut(s)	302, 427, 613, 659
HpyCH4V	TGCA	3 cut(s)	116, 176, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 292
HpyF3I	CTNAG	6 cut(s)	278, 291, 354, 495, 588, 777
Hsp92II	CATG	6 cut(s)	330, 469, 507, 516, 737, 751
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	383
Lsp1109I	GCAGC	2 cut(s)	175, 222
LweI	GCATC	2 cut(s)	232, 661
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	85, 742
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	4 cut(s)	138, 149, 317, 464
MfeI	CAATTG	1 cut(s)	582
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	9 cut(s)	9, 111, 229, 340, 540, 576, 582, 634, 825
MnlI	CCTC	9 cut(s)	34, 191, 300, 349, 519, 532, 583, 711, 718
MseI	TTAA	4 cut(s)	8, 258, 543, 824
MslI	CAYNNNNRTG	1 cut(s)	21
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	757
MwoI	GCNNNNNNNGC	2 cut(s)	283, 292
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	1 cut(s)	394
NheI	GCTAGC	1 cut(s)	50
NlaIII	CATG	6 cut(s)	330, 469, 507, 516, 737, 751
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	2 cut(s)	330, 737
PciI	ACATGT	2 cut(s)	326, 733
PctI	GAATGC	1 cut(s)	757
PfeI	GAWTC	5 cut(s)	415, 455, 549, 686, 787
PkrI	GCNGC	2 cut(s)	165, 237
PscI	ACATGT	2 cut(s)	326, 733
PshBI	ATTAAT	1 cut(s)	824
PsiI	TTATAA	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	2 cut(s)	556, 781
PstNI	CAGNNNCTG	1 cut(s)	784
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	4 cut(s)	8, 258, 543, 824
SatI	GCNGC	2 cut(s)	164, 236
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	2 cut(s)	556, 781
SduI	GDGCHC	1 cut(s)	279
SfaNI	GCATC	2 cut(s)	232, 661
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	9 cut(s)	9, 111, 229, 340, 540, 576, 582, 634, 825
SspMI	CTAG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	512
TaqI	TCGA	2 cut(s)	301, 660
TasI	AATT	9 cut(s)	9, 111, 229, 340, 540, 576, 582, 634, 825
TfiI	GAWTC	5 cut(s)	415, 455, 549, 686, 787
Tru1I	TTAA	4 cut(s)	8, 258, 543, 824
Tru9I	TTAA	4 cut(s)	8, 258, 543, 824
TscAI	CASTG	2 cut(s)	183, 286
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	2 cut(s)	163, 235
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	17, 156, 764
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	183, 286
VpaK11BI	GGWCC	1 cut(s)	556
VspI	ATTAAT	1 cut(s)	824
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	2 cut(s)	330, 737
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.