Rh5DG115900

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Forward (+)
10503991 .. 10504356
366 bp
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UTR
Exon/CDS
Intron
Rh5DG115900.1

Sequence Viewer

Length: 366 bp
ATGAGGAAGCACTTGCTATATCAAGAACAATGCAGGATTTACACCACCCTCAAGCTTGTCGGAAATAGGCTGACTAATGATGGCTTGAGGAAAATTTTTGATTCTTGTACTAATCTCGAGTCACTTGATTTGCGTTGCTGTTACCGTCTTAATCTAGCGGGAGATTTGGGAAGATGTGCTGAACAAATTAAAAGCTTGCGGCTTCCCAACGATTCCGTTGACGACATTGACTATCTTTCTTCAACTACAGTTAATTGTCACATAGCACCTTATGAGGATGACTACTCAGATTTTGATGAGGAGGAGGATGACGACTCAGAGTTTGATGATGAGGAGGACTACCTAGATACGATGGTTATGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

14.1

Weight (kDa)

4.16

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 158, 199
AcsI RAATTY 1 cut(s) 93
AfaI GTAC 1 cut(s) 109
AgsI TTSAA 1 cut(s) 243
AluBI AGCT 2 cut(s) 55, 195
AluI AGCT 2 cut(s) 55, 195
Ama87I CYCGRG 1 cut(s) 116
ApoI RAATTY 1 cut(s) 93
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AvaI CYCGRG 1 cut(s) 116
BaeI ACNNNNGTAYC 1 cut(s) 339
BccI CCATC 2 cut(s) 74, 346
BfaI CTAG 2 cut(s) 155, 344
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BmeT110I CYCGRG 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 35, 106
BseGI GGATG 2 cut(s) 283, 313
BseMII CTCAG 2 cut(s) 300, 330
BseRI GAGGAG 3 cut(s) 314, 317, 347
BsiHKCI CYCGRG 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 116
BspACI CCGC 2 cut(s) 158, 199
BspCNI CTCAG 2 cut(s) 299, 329
Bst4CI ACNGT 2 cut(s) 146, 250
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 286, 316
BstF5I GGATG 2 cut(s) 283, 313
BstSFI CTRYAG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 283, 313
Cac8I GCNNGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 108
CviJI RGCY 5 cut(s) 55, 70, 84, 195, 202
CviKI_1 RGCY 5 cut(s) 55, 70, 84, 195, 202
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 2 cut(s) 286, 316
Eco88I CYCGRG 1 cut(s) 116
FaiI YATR 4 cut(s) 19, 263, 273, 359
FauI CCCGC 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 2 cut(s) 290, 320
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 2 cut(s) 155, 344
GluI GCNGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 2 cut(s) 53, 193
HinfI GANTC 4 cut(s) 101, 119, 212, 314
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 62, 289, 319
Hpy188III TCNNGA 2 cut(s) 23, 116
Hpy8I GTNNAC 1 cut(s) 220
HpyCH4III ACNGT 2 cut(s) 146, 250
HpyCH4V TGCA 1 cut(s) 33
HpyF3I CTNAG 2 cut(s) 286, 316
LpnPI CCDG 1 cut(s) 19
MaeI CTAG 2 cut(s) 155, 344
MaeIII GTNAC 3 cut(s) 120, 140, 257
MboII GAAGA 2 cut(s) 183, 231
MluCI AATT 3 cut(s) 93, 186, 253
MlyI GAGTC 2 cut(s) 128, 308
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 8 cut(s) 59, 81, 268, 292, 295, 298, 325, 328
MseI TTAA 3 cut(s) 150, 189, 252
NmuCI GTSAC 2 cut(s) 120, 257
PaeR7I CTCGAG 1 cut(s) 116
PfeI GAWTC 2 cut(s) 101, 212
PkrI GCNGC 1 cut(s) 201
PleI GAGTC 2 cut(s) 127, 308
PpsI GAGTC 2 cut(s) 127, 308
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 3 cut(s) 150, 189, 252
SatI GCNGC 1 cut(s) 200
SchI GAGTC 2 cut(s) 128, 308
SetI ASST 4 cut(s) 57, 197, 271, 345
SfcI CTRYAG 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 3 cut(s) 50, 85, 116
SmoI CTYRAG 3 cut(s) 50, 85, 116
Sse9I AATT 3 cut(s) 93, 186, 253
SsiI CCGC 2 cut(s) 158, 199
SspMI CTAG 2 cut(s) 155, 344
TaaI ACNGT 2 cut(s) 146, 250
TaqI TCGA 1 cut(s) 117
TasI AATT 3 cut(s) 93, 186, 253
TatI WGTACW 1 cut(s) 107
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 2 cut(s) 101, 212
Tru1I TTAA 3 cut(s) 150, 189, 252
Tru9I TTAA 3 cut(s) 150, 189, 252
TseFI GTSAC 2 cut(s) 120, 257
Tsp45I GTSAC 2 cut(s) 120, 257
TspGWI ACGGA 1 cut(s) 205
XapI RAATTY 1 cut(s) 93
XhoI CTCGAG 1 cut(s) 116
XspI CTAG 2 cut(s) 155, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.