Rh5DG160100

RIO1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Forward (+)
16378587 .. 16385319
6733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG160100.1

Sequence Viewer

Length: 282 bp
ATGTCAAGAATTTGGTATCAAACACGTCTTCTCTTCTCAATACCCAGAGCAATTGCACAACCCAGTTCTCATCCTGGATTCGTTCCCGTCGTCGTTCTCCACCACCTCCTACGCTGTCGCTCCCACCACCTCCATTTTGGAAAGAGGGTTTTTAAGTCAACCTTTGTGGGAAGGAGGTCTATTGTCAAGGAATGGTTTTCGAAGAAGTACAGGCATCCTACTTTGGATGCAAAACTTACACTCAGGCGCCTCAATCCTGGGGATGGTTGCGTTCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

93

Amino Acids

10.91

Weight (kDa)

11.61

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 246
AcsI RAATTY 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 23
AjiI CACGTC 1 cut(s) 26
AjnI CCWGG 2 cut(s) 73, 256
ApoI RAATTY 1 cut(s) 9
AspLEI GCGC 1 cut(s) 249
AsuII TTCGAA 1 cut(s) 200
BanI GGYRCC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 20
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 2 cut(s) 75, 258
BfoI RGCGCY 1 cut(s) 250
Bme1390I CCNGG 2 cut(s) 75, 258
BmgBI CACGTC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 2 cut(s) 75, 258
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 2 cut(s) 217, 223
BmuI ACTGGG 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 20
Bpu14I TTCGAA 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 63
BseBI CCWGG 2 cut(s) 75, 258
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 4 cut(s) 70, 214, 232, 268
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 63
BshNI GGYRCC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 263
Bsp119I TTCGAA 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 248
BspT104I TTCGAA 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 246
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 257
BssNI GRCGYC 1 cut(s) 247
Bst2UI CCWGG 2 cut(s) 75, 258
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 4 cut(s) 70, 214, 232, 268
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 1 cut(s) 249
BstNI CCWGG 2 cut(s) 75, 258
BstSCI CCNGG 2 cut(s) 73, 256
BstV2I GAAGAC 1 cut(s) 20
BtrI CACGTC 1 cut(s) 26
BtsCI GGATG 4 cut(s) 70, 214, 232, 268
CfoI GCGC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 208
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 242
DinI GGCGCC 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 73, 256
EgeI GGCGCC 1 cut(s) 248
EheI GGCGCC 1 cut(s) 248
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FokI GGATG 4 cut(s) 57, 201, 239, 275
GlaI GCGC 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 250
HhaI GCGC 1 cut(s) 249
Hin1I GRCGYC 1 cut(s) 247
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 159
Hpy99I CGWCG 2 cut(s) 92, 95
HpyAV CCTTC 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 56, 230
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 25
Hsp92I GRCGYC 1 cut(s) 247
HspAI GCGC 1 cut(s) 247
KasI GGCGCC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 8 cut(s) 58, 60, 76, 87, 196, 229, 243, 270
LweI GCATC 2 cut(s) 217, 223
MaeII ACGT 1 cut(s) 25
MboII GAAGA 3 cut(s) 20, 25, 214
MfeI CAATTG 1 cut(s) 51
MluCI AATT 2 cut(s) 9, 51
Mly113I GGCGCC 1 cut(s) 247
MnlI CCTC 5 cut(s) 116, 138, 140, 168, 260
MseI TTAA 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 75, 258
MunI CAATTG 1 cut(s) 51
MvaI CCWGG 2 cut(s) 75, 258
NarI GGCGCC 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 248
NspV TTCGAA 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 78
PfoI TCCNGGA 1 cut(s) 73
PluTI GGCGCC 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 73, 256
PspGI CCWGG 2 cut(s) 73, 256
PspN4I GGNNCC 1 cut(s) 248
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 153
ScrFI CCNGG 2 cut(s) 75, 258
SetI ASST 5 cut(s) 28, 108, 132, 164, 179
SfaNI GCATC 2 cut(s) 217, 223
SfoI GGCGCC 1 cut(s) 248
SfuI TTCGAA 1 cut(s) 200
Sse9I AATT 2 cut(s) 9, 51
SspDI GGCGCC 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 73, 256
TaiI ACGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 200
TasI AATT 2 cut(s) 9, 51
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
XapI RAATTY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.