Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16650512 .. 16653397

Gene Structure 2886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG160800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAAGGCAAGTGGTTCTCATGCCCAAGTAGTACTAGACCATCATCAGCCAAAACAAAACCATCACCACCATCTGGAAGCTTCACTGTATGATTACCCTAACACTTTCGATGGTTCGATGCACCTGCCGCAGTTGTTCAGTCCAGAGTCCGCAGCTGCTGCAGCAGCTAATAATTCATCATCATTTCTATCTGCACCTAATACCAATATGTCGGCTTTGAACCCCCTGGACTTGGAGTGCTCTCAAAACCTGTTGAAGCTAACCTCCACCACGGCCGGTTCTTGTGGACTCAATATGCAACAGCAACAGCAGCAGCAGGAGATGAGGTCGTTCAATGGTGATTGGTCCTTCTTGGACAAGCTCCTCCAATCTCATCACCCTCAGCCCCAGGATCATTATCATGTGGCCACTGCCGCCGCTACTACTTCAACAACGCAGAGATTATTTCCATTTCAATACCTTGGCTGCAGCGGGTCAACTACTCATGTCGACATTTTAAAGTTCTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

170

Amino Acids

18.73

Weight (kDa)

6.32

Isoelectric Point (pI)

55.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	132
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	489
AciI	CCGC	5 cut(s)	128, 150, 414, 417, 471
AclWI	GGATC	1 cut(s)	399
AcoI	YGGCCR	2 cut(s)	273, 405
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	73, 232
AgsI	TTSAA	5 cut(s)	220, 256, 334, 429, 455
AjnI	CCWGG	2 cut(s)	225, 387
AluBI	AGCT	5 cut(s)	80, 155, 167, 259, 361
AluI	AGCT	5 cut(s)	80, 155, 167, 259, 361
Alw21I	GWGCWC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	399
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	2 cut(s)	273, 405
ApeKI	GCWGC	9 cut(s)	152, 155, 158, 161, 164, 310, 313, 465, 468
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	3 cut(s)	56, 350, 368
AvaII	GGWCC	1 cut(s)	345
BalI	TGGCCA	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	242
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	9 cut(s)	142, 145, 164, 173, 176, 322, 325, 452, 480
BccI	CCATC	4 cut(s)	48, 69, 78, 104
BceAI	ACGGC	1 cut(s)	288
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	2 cut(s)	227, 389
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	2 cut(s)	159, 466
BfuAI	ACCTGC	1 cut(s)	132
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	2 cut(s)	227, 389
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BmrFI	CCNGG	2 cut(s)	227, 389
BmsI	GCATC	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	225, 270, 387, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 232
Bse118I	RCCGGY	1 cut(s)	275
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	227, 389
BseDI	CCNNGG	4 cut(s)	225, 270, 387, 460
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	73, 232
BseMII	CTCAG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	353
BseX3I	CGGCCG	1 cut(s)	273
BseXI	GCAGC	9 cut(s)	142, 145, 164, 173, 176, 322, 325, 452, 480
BsgI	GTGCAG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	275, 407
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	2 cut(s)	73, 232
BsnI	GGCC	2 cut(s)	275, 407
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	5 cut(s)	128, 150, 414, 417, 471
BspANI	GGCC	2 cut(s)	275, 407
BspCNI	CTCAG	1 cut(s)	394
BspMAI	CTGCAG	2 cut(s)	163, 470
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	4 cut(s)	225, 270, 387, 460
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	460
Bst2UI	CCWGG	2 cut(s)	227, 389
Bst4CI	ACNGT	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	381
BstDSI	CCRYGG	1 cut(s)	270
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	6 cut(s)	127, 158, 161, 164, 310, 413
BstNI	CCWGG	2 cut(s)	227, 389
BstSCI	CCNGG	2 cut(s)	225, 387
BstSFI	CTRYAG	2 cut(s)	159, 466
BstV1I	GCAGC	9 cut(s)	142, 145, 164, 173, 176, 322, 325, 452, 480
BstZI	CGGCCG	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	275, 407
BtgI	CCRYGG	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	2 cut(s)	83, 408
BveI	ACCTGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	3 cut(s)	20, 401, 485
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DraI	TTTAAA	1 cut(s)	498
EaeI	YGGCCR	2 cut(s)	273, 405
EagI	CGGCCG	1 cut(s)	273
EclXI	CGGCCG	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	345
Eco52I	CGGCCG	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	225, 387
EcoT14I	CCWWGG	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	3 cut(s)	23, 404, 488
FaiI	YATR	6 cut(s)	21, 90, 209, 296, 402, 486
FatI	CATG	3 cut(s)	19, 400, 484
FauI	CCCGC	1 cut(s)	464
FblI	GTMKAC	1 cut(s)	489
FspBI	CTAG	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	275, 407
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	3 cut(s)	23, 404, 488
HincII	GTYRAC	2 cut(s)	477, 490
HindII	GTYRAC	2 cut(s)	477, 490
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	2 cut(s)	146, 288
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	3 cut(s)	56, 350, 368
Hpy166II	GTNNAC	3 cut(s)	287, 477, 490
Hpy188III	TCNNGA	2 cut(s)	74, 143
Hpy8I	GTNNAC	3 cut(s)	287, 477, 490
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4V	TGCA	5 cut(s)	121, 161, 194, 298, 468
HpyF10VI	GCNNNNNNNGC	6 cut(s)	127, 158, 161, 164, 310, 413
HpyF3I	CTNAG	1 cut(s)	381
Hsp92II	CATG	3 cut(s)	23, 404, 488
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	366
Lsp1109I	GCAGC	9 cut(s)	142, 145, 164, 173, 176, 322, 325, 452, 480
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	1 cut(s)	35
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	242
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	1 cut(s)	172
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	2 cut(s)	155, 282
MnlI	CCTC	4 cut(s)	274, 318, 374, 390
Mox20I	TGGCCA	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	1 cut(s)	497
MslI	CAYNNNNRTG	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	407
MspA1I	CMGCKG	2 cut(s)	155, 471
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	227, 389
MvaI	CCWGG	2 cut(s)	227, 389
MwoI	GCNNNNNNNGC	6 cut(s)	127, 158, 161, 164, 310, 413
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	3 cut(s)	23, 404, 488
PaqCI	CACCTGC	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	73
PleI	GAGTC	2 cut(s)	154, 282
PpsI	GAGTC	2 cut(s)	154, 282
Psp6I	CCWGG	2 cut(s)	225, 387
PspGI	CCWGG	2 cut(s)	225, 387
PspPI	GGNCC	1 cut(s)	345
PstI	CTGCAG	2 cut(s)	163, 470
PstNI	CAGNNNCTG	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	399
SalI	GTCGAC	1 cut(s)	488
SaqAI	TTAA	1 cut(s)	497
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	1 cut(s)	345
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	2 cut(s)	155, 282
ScrFI	CCNGG	2 cut(s)	227, 389
SduI	GDGCHC	1 cut(s)	242
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	2 cut(s)	159, 466
SinI	GGWCC	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	399
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	5 cut(s)	128, 150, 414, 417, 471
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	225, 387
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	108, 116, 489
TasI	AATT	1 cut(s)	172
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	3 cut(s)	130, 416, 419
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	2 cut(s)	90, 415
TseI	GCWGC	9 cut(s)	152, 155, 158, 161, 164, 310, 313, 465, 468
TspDTI	ATGAA	2 cut(s)	17, 165
TspRI	CASTG	2 cut(s)	90, 415
Van91I	CCANNNNNTGG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	489
XspI	CTAG	1 cut(s)	35
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.