Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19953856 .. 19963274

Gene Structure 9419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG180500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAGCCATTCGAATTTGGCCCAGAATTACTTGACAGGACCTCTCTCTCCATCAATTGGAAATCTTACCGACATGCAATACTTGAGCCTTGGCATTAATTCATTATCAGGCGAGATACCGAAGGAACTCGGGAAGCTCACTGATTTAATATCATTGGCTTTTGGGACAAACAACTTTTCTGGTCCCCTGCCATCTGAGCTAGGGAATTTGACAAAATTAGAACAGATTTACATTGATAGTTCTGGAGCTGGTGGCGCAATTCCATCAACATTTGCTAATCTACAAAGCTTGAAGACAGGTATCCTGGTTTTGAAGGATTTTGATATACGAAAGGAGGCAGGGGCATCTCTCCTACCTCTTCGGAAGGAATACAAGGCTCATGTTTCAGAGAACTACCTTGAAATCCATCTCTTTTGGGCTGGAAAGGGGACTTGTTGTGTACCTGTTCCTGGTACTTATGGACCTGCTATTTCAGCCATCAGGGCCACACCAGATTTCATTCCTGATGACAATAACAATAATACAAATGAAAAGAAGATTAGGACATGGTTGATTGTGGGGTTTGCTATTGGTGGTGGAGTTTTACTTCTGGCTTGGGTCTTGCATGAAAGCAAACGTGAAGTTGAACTAGTGGACTCTGGATTATCTGAATTTGACGAGGAAGAAGTGAGACGAGTAATCAACATAGGACTTTTGTGCACTCAAACATCACCAACACTACGACCATCAATGTCTCGTGTGGTGGGAATGCTTTCAGGAGACATTGAAGTGACGATATTAACTTCAAAGCCCGGTTATTTGACAGACTGGAAGTTTGATGATGTAAGTAGTGTAGCCAGCACCATGATGGATATGCCAAGTAACGGAATAAATACTAGCCTTTTCAACTCAACAGCATGTACAAGCTTGATGGGGGATGCACAGCAATCACCTGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

313

Amino Acids

33.69

Weight (kDa)

4.91

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	18 - 98	1.9e-08	Leucine-rich repeat region
Malectin	PF11721	102 - 160	4.2e-10	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	472
AccB7I	CCANNNNNTGG	1 cut(s)	56
AcsI	RAATTY	3 cut(s)	13, 205, 650
AfaI	GTAC	3 cut(s)	441, 454, 901
AfiI	CCNNNNNNNGG	3 cut(s)	56, 449, 863
AgsI	TTSAA	7 cut(s)	292, 313, 401, 626, 767, 786, 886
AhlI	ACTAGT	1 cut(s)	628
AjnI	CCWGG	2 cut(s)	303, 448
AluBI	AGCT	5 cut(s)	136, 199, 248, 288, 906
AluI	AGCT	5 cut(s)	136, 199, 248, 288, 906
Alw21I	GWGCWC	1 cut(s)	701
Alw26I	GTCTC	3 cut(s)	664, 738, 753
Alw44I	GTGCAC	1 cut(s)	697
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	18, 483
ApaLI	GTGCAC	1 cut(s)	697
ApoI	RAATTY	3 cut(s)	13, 205, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	797, 829
AseI	ATTAAT	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	751
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	5 cut(s)	19, 38, 182, 461, 483
AsuC2I	CCSGG	1 cut(s)	792
AsuHPI	GGTGA	2 cut(s)	702, 921
AsuII	TTCGAA	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	3 cut(s)	38, 182, 461
BaeGI	GKGCMC	1 cut(s)	701
BauI	CACGAG	1 cut(s)	735
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	701
BccI	CCATC	8 cut(s)	58, 199, 271, 414, 485, 733, 841, 904
BciT130I	CCWGG	2 cut(s)	305, 450
BciVI	GTATCC	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	792
BcoDI	GTCTC	3 cut(s)	664, 738, 753
BcuI	ACTAGT	1 cut(s)	628
BfaI	CTAG	3 cut(s)	200, 629, 876
BfuAI	ACCTGC	1 cut(s)	472
BfuI	GTATCC	1 cut(s)	311
BglI	GCCNNNNNGGC	1 cut(s)	482
Bme1390I	CCNGG	3 cut(s)	305, 450, 792
Bme18I	GGWCC	3 cut(s)	38, 182, 461
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	5 cut(s)	19, 38, 182, 461, 483
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	3 cut(s)	305, 450, 792
BmsI	GCATC	2 cut(s)	353, 907
BpiI	GAAGAC	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	792
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 449, 863
Bse1I	ACTGG	1 cut(s)	812
BseBI	CCWGG	2 cut(s)	305, 450
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	922
BseLI	CCNNNNNNNGG	3 cut(s)	56, 449, 863
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	812
BseSI	GKGCMC	1 cut(s)	701
BshFI	GGCC	2 cut(s)	20, 485
BsiHKAI	GWGCWC	1 cut(s)	701
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	792
BslFI	GGGAC	3 cut(s)	168, 178, 442
BslI	CCNNNNNNNGG	3 cut(s)	56, 449, 863
BsmAI	GTCTC	3 cut(s)	664, 738, 753
BsmBI	CGTCTC	1 cut(s)	664
BsmFI	GGGAC	3 cut(s)	168, 178, 442
BsmI	GAATGC	1 cut(s)	753
BsnI	GGCC	2 cut(s)	20, 485
BsoBI	CYCGRG	1 cut(s)	128
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	701
Bsp1407I	TGTACA	1 cut(s)	899
BspANI	GGCC	2 cut(s)	20, 485
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	472
BspT104I	TTCGAA	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	899
BsrI	ACTGG	1 cut(s)	812
BssECI	CCNNGG	1 cut(s)	88
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	1 cut(s)	88
Bst2BI	CACGAG	1 cut(s)	735
Bst2UI	CCWGG	2 cut(s)	305, 450
Bst6I	CTCTTC	1 cut(s)	363
BstAUI	TGTACA	1 cut(s)	899
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	838
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	922
BstHHI	GCGC	1 cut(s)	257
BstMAI	GTCTC	3 cut(s)	664, 738, 753
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 254, 473, 482
BstNI	CCWGG	2 cut(s)	305, 450
BstNSI	RCATGY	2 cut(s)	76, 900
BstSCI	CCNGG	3 cut(s)	303, 448, 790
BstSLI	GKGCMC	1 cut(s)	701
BstV2I	GAAGAC	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	20, 485
BtsCI	GGATG	1 cut(s)	922
BtsIMutI	CAGTG	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	838
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	5 cut(s)	19, 38, 182, 461, 483
Csp6I	GTAC	3 cut(s)	440, 453, 900
CviAII	CATG	6 cut(s)	73, 380, 546, 605, 844, 897
CviQI	GTAC	3 cut(s)	440, 453, 900
DdeI	CTNAG	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	88
Eco47I	GGWCC	3 cut(s)	38, 182, 461
Eco88I	CYCGRG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	303, 448
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	664
FaeI	CATG	6 cut(s)	76, 383, 549, 608, 847, 900
FaqI	GGGAC	3 cut(s)	168, 178, 442
FatI	CATG	6 cut(s)	72, 379, 545, 604, 843, 896
FokI	GGATG	1 cut(s)	929
FspBI	CTAG	3 cut(s)	200, 629, 876
GlaI	GCGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	20, 485
HapII	CCGG	1 cut(s)	792
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	6 cut(s)	76, 383, 549, 608, 847, 900
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HindIII	AAGCTT	2 cut(s)	286, 904
HinfI	GANTC	1 cut(s)	635
HpaII	CCGG	1 cut(s)	792
HphI	GGTGA	2 cut(s)	702, 921
Hpy166II	GTNNAC	3 cut(s)	440, 634, 699
Hpy188I	TCNGA	4 cut(s)	196, 363, 388, 649
Hpy188III	TCNNGA	5 cut(s)	130, 243, 503, 639, 756
Hpy8I	GTNNAC	3 cut(s)	440, 634, 699
HpyAV	CCTTC	3 cut(s)	115, 307, 358
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	5 cut(s)	76, 604, 699, 920, 935
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 254, 473, 482
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	616
Hsp92II	CATG	6 cut(s)	76, 383, 549, 608, 847, 900
HspAI	GCGC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	245
LweI	GCATC	2 cut(s)	353, 907
MaeI	CTAG	3 cut(s)	200, 629, 876
MaeII	ACGT	1 cut(s)	616
MaeIII	GTNAC	2 cut(s)	769, 860
MboII	GAAGA	4 cut(s)	304, 350, 547, 674
MfeI	CAATTG	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	701
MluCI	AATT	9 cut(s)	13, 25, 54, 97, 205, 215, 258, 650, 937
MlyI	GAGTC	1 cut(s)	629
MnlI	CCTC	4 cut(s)	51, 328, 366, 652
MroXI	GAANNNNTTC	1 cut(s)	751
MseI	TTAA	4 cut(s)	96, 146, 779, 940
MslI	CAYNNNNRTG	2 cut(s)	767, 845
MspI	CCGG	1 cut(s)	792
MspR9I	CCNGG	3 cut(s)	305, 450, 792
MunI	CAATTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	753
MvaI	CCWGG	2 cut(s)	305, 450
MwoI	GCNNNNNNNGC	4 cut(s)	196, 254, 473, 482
NciI	CCSGG	1 cut(s)	792
NlaIII	CATG	6 cut(s)	76, 383, 549, 608, 847, 900
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	769
NspI	RCATGY	2 cut(s)	76, 900
NspV	TTCGAA	1 cut(s)	11
PctI	GAATGC	1 cut(s)	753
PdmI	GAANNNNTTC	1 cut(s)	751
PflMI	CCANNNNNTGG	1 cut(s)	56
PleI	GAGTC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	629
PpuMI	RGGWCCY	1 cut(s)	38
PshBI	ATTAAT	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	303, 448
PspGI	CCWGG	2 cut(s)	303, 448
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	5 cut(s)	19, 38, 182, 461, 483
PspPPI	RGGWCCY	1 cut(s)	38
RsaI	GTAC	3 cut(s)	441, 454, 901
RsaNI	GTAC	3 cut(s)	440, 453, 900
RseI	CAYNNNNRTG	2 cut(s)	767, 845
SaqAI	TTAA	4 cut(s)	96, 146, 779, 940
Sau96I	GGNCC	5 cut(s)	19, 38, 182, 461, 483
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	3 cut(s)	305, 450, 792
SduI	GDGCHC	1 cut(s)	701
SfaNI	GCATC	2 cut(s)	353, 907
SfuI	TTCGAA	1 cut(s)	11
SinI	GGWCC	3 cut(s)	38, 182, 461
SmiMI	CAYNNNNRTG	2 cut(s)	767, 845
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
SpeI	ACTAGT	1 cut(s)	628
Sse9I	AATT	9 cut(s)	13, 25, 54, 97, 205, 215, 258, 650, 937
SspMI	CTAG	3 cut(s)	200, 629, 876
StyD4I	CCNGG	3 cut(s)	303, 448, 790
StyI	CCWWGG	1 cut(s)	88
TaiI	ACGT	1 cut(s)	619
TaqI	TCGA	1 cut(s)	11
TasI	AATT	9 cut(s)	13, 25, 54, 97, 205, 215, 258, 650, 937
TatI	WGTACW	1 cut(s)	899
Tru1I	TTAA	4 cut(s)	96, 146, 779, 940
Tru9I	TTAA	4 cut(s)	96, 146, 779, 940
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	769
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	4 cut(s)	90, 487, 543, 621
TspGWI	ACGGA	1 cut(s)	879
TspRI	CASTG	1 cut(s)	145
Van91I	CCANNNNNTGG	1 cut(s)	56
VneI	GTGCAC	1 cut(s)	697
VpaK11BI	GGWCC	3 cut(s)	38, 182, 461
VspI	ATTAAT	1 cut(s)	96
XapI	RAATTY	3 cut(s)	13, 205, 650
XceI	RCATGY	2 cut(s)	76, 900
XcmI	CCANNNNNNNNNTGG	1 cut(s)	844
XmnI	GAANNNNTTC	1 cut(s)	751
XspI	CTAG	3 cut(s)	200, 629, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.