Rh5DG187600

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Reverse (-)
20837835 .. 20838296
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG187600.1

Sequence Viewer

Length: 462 bp
ATGTCTATTCTTGGAAGAGCACAGAAGATCCTGCTCCAGGAGAGTTTTCAGTACGGATGGATCTTCGTGGTTTCCCACAAATTTTTTATGAAGGGAGCTAAGATACAGAGTAGAGGAGGGTCATGGAACGGCTTTCATGTAACAGGATATGGATATCCTAGTCCACCAGAACCAAACTCACCATCTGGGTTTCAATTTGTGTTGAATAAGGATGAGGTCTATTCTGAGTACAAACTCATAAACAGATCATTGTTCTCGAGATATGTGTTGAGTCCCCTAGGTACTGCCCAGCGATTTGCATGGGTCGACCAAACACATATTTGGGAACTTTCCTCTACAGTTCTAGCAGATAGTGTGATAGTTATGCCTTGTGTGGCGCATATACGAGGGGCAATATCAATACCTCTCCCATCTGTGCATGCTTGCAGCCTTGCAGGGATTTGTACCAAAATCTCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

153

Amino Acids

17.03

Weight (kDa)

9.41

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 38 - 115 1e-05 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AclWI GGATC 2 cut(s) 22, 68
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 4 cut(s) 53, 230, 283, 445
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 2 cut(s) 194, 205
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw21I GWGCWC 1 cut(s) 22
AlwI GGATC 2 cut(s) 22, 68
Ama87I CYCGRG 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 426
ApoI RAATTY 1 cut(s) 80
AspA2I CCTAGG 1 cut(s) 277
AspLEI GCGC 1 cut(s) 379
AsuHPI GGTGA 1 cut(s) 171
AvaI CYCGRG 1 cut(s) 256
AvrII CCTAGG 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 438
BccI CCATC 3 cut(s) 51, 190, 418
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 38
BfaI CTAG 3 cut(s) 159, 278, 344
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 427
BlnI CCTAGG 1 cut(s) 277
BlsI GCNGC 1 cut(s) 428
Bme1390I CCNGG 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 2 cut(s) 62, 217
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 438
BseYI CCCAGC 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 256
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 3 cut(s) 27, 60, 245
BspCNI CTCAG 1 cut(s) 217
BspPI GGATC 2 cut(s) 22, 68
BspQI GCTCTTC 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 3 cut(s) 27, 60, 245
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 10
BstC8I GCNNGC 2 cut(s) 420, 424
BstDEI CTNAG 2 cut(s) 99, 225
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 62, 217
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 3 cut(s) 30, 63, 248
BstMBI GATC 3 cut(s) 27, 60, 245
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 438
BstX2I RGATCY 2 cut(s) 27, 60
BstYI RGATCY 2 cut(s) 27, 60
BtsCI GGATG 2 cut(s) 62, 217
Cac8I GCNNGC 2 cut(s) 420, 424
CfoI GCGC 1 cut(s) 379
Csp6I GTAC 4 cut(s) 52, 229, 282, 444
CviAII CATG 4 cut(s) 123, 137, 300, 419
CviJI RGCY 3 cut(s) 98, 132, 429
CviKI_1 RGCY 3 cut(s) 98, 132, 429
CviQI GTAC 4 cut(s) 52, 229, 282, 444
DdeI CTNAG 2 cut(s) 99, 225
DpnI GATC 3 cut(s) 29, 62, 247
DpnII GATC 3 cut(s) 27, 60, 245
Eam1104I CTCTTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 277
Eco32I GATATC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 256
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 36
EcoRV GATATC 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 4 cut(s) 126, 140, 303, 422
FaqI GGGAC 1 cut(s) 258
FatI CATG 4 cut(s) 122, 136, 299, 418
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 2 cut(s) 69, 224
Fsp4HI GCNGC 1 cut(s) 427
FspBI CTAG 3 cut(s) 159, 278, 344
GlaI GCGC 1 cut(s) 378
GluI GCNGC 1 cut(s) 427
GsaI CCCAGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 20
HhaI GCGC 1 cut(s) 379
Hin1II CATG 4 cut(s) 126, 140, 303, 422
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 1 cut(s) 271
HphI GGTGA 1 cut(s) 171
Hpy166II GTNNAC 2 cut(s) 164, 307
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 256, 258
Hpy8I GTNNAC 2 cut(s) 164, 307
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 4 cut(s) 299, 418, 426, 434
HpyF3I CTNAG 2 cut(s) 99, 225
Hsp92II CATG 4 cut(s) 126, 140, 303, 422
HspAI GCGC 1 cut(s) 377
Kzo9I GATC 3 cut(s) 27, 60, 245
LguI GCTCTTC 1 cut(s) 10
LmnI GCTCC 2 cut(s) 39, 95
LpnPI CCDG 8 cut(s) 23, 44, 50, 129, 171, 180, 302, 420
Lsp1109I GCAGC 1 cut(s) 438
MaeI CTAG 3 cut(s) 159, 278, 344
MaeIII GTNAC 1 cut(s) 139
MalI GATC 3 cut(s) 29, 62, 247
MboI GATC 3 cut(s) 27, 60, 245
MboII GAAGA 3 cut(s) 27, 37, 55
MflI RGATCY 2 cut(s) 27, 60
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 2 cut(s) 80, 194
MlyI GAGTC 1 cut(s) 280
MnlI CCTC 6 cut(s) 107, 110, 208, 343, 380, 414
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
NdeII GATC 3 cut(s) 27, 60, 245
NlaIII CATG 4 cut(s) 126, 140, 303, 422
NspI RCATGY 1 cut(s) 422
PaeI GCATGC 1 cut(s) 422
PaeR7I CTCGAG 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 1 cut(s) 428
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 1 cut(s) 36
PsuI RGATCY 2 cut(s) 27, 60
RsaI GTAC 4 cut(s) 53, 230, 283, 445
RsaNI GTAC 4 cut(s) 52, 229, 282, 444
SalI GTCGAC 1 cut(s) 305
SapI GCTCTTC 1 cut(s) 10
SatI GCNGC 1 cut(s) 427
Sau3AI GATC 3 cut(s) 27, 60, 245
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 22
SetI ASST 4 cut(s) 100, 219, 283, 406
SfcI CTRYAG 1 cut(s) 336
Sfr274I CTCGAG 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
SphI GCATGC 1 cut(s) 422
Sse9I AATT 2 cut(s) 80, 194
SspMI CTAG 3 cut(s) 159, 278, 344
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 257, 306
TasI AATT 2 cut(s) 80, 194
TatI WGTACW 1 cut(s) 228
TseI GCWGC 1 cut(s) 426
TspDTI ATGAA 2 cut(s) 104, 125
TspGWI ACGGA 1 cut(s) 69
XagI CCTNNNNNAGG 1 cut(s) 35
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 422
XhoI CTCGAG 1 cut(s) 256
XmaJI CCTAGG 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 3 cut(s) 159, 278, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.