Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21013176 .. 21017275

Gene Structure 4100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG189400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGAGCAACATAAGCATGGTGGAGGCAAAGTTGCCCCCTGGTTTTAGGTTCCATCCCAGAGATGAAGAGCTGGTCTGTGATTATCTGATGAAGAAGGTGACTCACTCCAACTCCACTCTCATGATCGAAGTCGACCTCAACAAGTGTGAGCCTTGGGACATTCCTGGAAGATTGGGTTCTATGCAGGGTGTTTTACAAAAACAGAGAACTGATTGCTGCCAAACCCAGCATGGGATCGTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

81

Amino Acids

9.25

Weight (kDa)

5.84

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 57	3.9e-12	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	231
AjnI	CCWGG	2 cut(s)	37, 163
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AlwI	GGATC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	1 cut(s)	60
BciT130I	CCWGG	2 cut(s)	39, 165
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	39, 165
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	2 cut(s)	39, 165
BsaJI	CCNNGG	2 cut(s)	37, 152
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 95, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	39, 165
BseDI	CCNNGG	2 cut(s)	37, 152
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	203
BseYI	CCCAGC	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	123, 234
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	242
BspQI	GCTCTTC	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	37, 152
BssMI	GATC	2 cut(s)	123, 234
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	39, 165
Bst6I	CTCTTC	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	126, 237
BstMBI	GATC	2 cut(s)	123, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	2 cut(s)	39, 165
BstSCI	CCNGG	2 cut(s)	37, 163
BstV1I	GCAGC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	52
CciI	TCATGA	1 cut(s)	120
CviAII	CATG	3 cut(s)	16, 121, 230
CviJI	RGCY	2 cut(s)	70, 151
CviKI_1	RGCY	2 cut(s)	70, 151
DpnI	GATC	2 cut(s)	125, 236
DpnII	GATC	2 cut(s)	123, 234
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	37, 163
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	3 cut(s)	19, 124, 233
FaiI	YATR	5 cut(s)	11, 17, 122, 182, 231
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	15, 120, 229
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	217
GluI	GCNGC	1 cut(s)	217
GsaI	CCCAGC	1 cut(s)	229
Hin1II	CATG	3 cut(s)	19, 124, 233
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	100
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	19, 124, 233
Kzo9I	GATC	2 cut(s)	123, 234
LguI	GCTCTTC	1 cut(s)	60
LpnPI	CCDG	8 cut(s)	24, 51, 56, 70, 150, 170, 177, 239
Lsp1109I	GCAGC	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	2 cut(s)	125, 236
MboI	GATC	2 cut(s)	123, 234
MboII	GAAGA	3 cut(s)	77, 103, 180
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	2 cut(s)	16, 146
MslI	CAYNNNNRTG	2 cut(s)	14, 119
MspR9I	CCNGG	2 cut(s)	39, 165
MvaI	CCWGG	2 cut(s)	39, 165
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeII	GATC	2 cut(s)	123, 234
NlaIII	CATG	3 cut(s)	19, 124, 233
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	97
PagI	TCATGA	1 cut(s)	120
PciSI	GCTCTTC	1 cut(s)	60
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	37, 163
PspFI	CCCAGC	1 cut(s)	225
PspGI	CCWGG	2 cut(s)	37, 163
PspN4I	GGNNCC	1 cut(s)	50
RseI	CAYNNNNRTG	2 cut(s)	14, 119
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	60
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	123, 234
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	39, 165
SetI	ASST	4 cut(s)	50, 72, 99, 138
SmiMI	CAYNNNNRTG	2 cut(s)	14, 119
StyD4I	CCNGG	2 cut(s)	37, 163
StyI	CCWWGG	1 cut(s)	152
TaqI	TCGA	3 cut(s)	126, 132, 240
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	78, 104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.