Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21017496 .. 21037902

Gene Structure 20407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG189500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAACAGAACGTACCCTCCACCGGCTGTGGCCAGTCGTCGAATGCGGCGACAACTACATTCCTTGACACTGCTAATTTTTCATGTGACAATAGGAAGGTACTGAAGGCTGTTTTGAGTCAGCTTACCAAGATGGAAAGCAGCTGCTACCCTAGCACACCGTCGTCGGTCTTGAAAGGCTCATCACCACAAAGCTTCGGAGGAGAAGCTGCTGGAAGTAGTTCGGATAACTACCTGTCTGATCATCAAGTTGCTTCTAATGGTGTAGTTGTGGGCATTGATCCTCCTAGTGTTGATCACGGCTCACCTCAAGAGCGCAAAATTCCTATTAAGAAGAGTGTTCAGCAGGATATGGTTGATAGGATAAGCCCTAATAATCAAAGGGAATCTTCAGGTTCAACACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

135

Amino Acids

14.16

Weight (kDa)

5.57

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	2 cut(s)	125, 375
AfaI	GTAC	2 cut(s)	15, 102
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	175, 399
AloI	GAACNNNNNNTCC	1 cut(s)	34
AluBI	AGCT	4 cut(s)	124, 144, 195, 209
AluI	AGCT	4 cut(s)	124, 144, 195, 209
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	141, 144, 209
ApoI	RAATTY	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	177, 297
BalI	TGGCCA	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	131, 153, 196
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	316
BclI	TGATCA	2 cut(s)	241, 295
BfaI	CTAG	2 cut(s)	153, 288
BisI	GCNGC	4 cut(s)	48, 142, 145, 210
BlsI	GCNGC	4 cut(s)	49, 143, 146, 211
BpuEI	CTTGAG	1 cut(s)	294
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	3 cut(s)	131, 153, 196
BshFI	GGCC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	241, 280, 295
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	275
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	23
BssMI	GATC	3 cut(s)	241, 280, 295
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	3 cut(s)	244, 283, 298
BstMBI	GATC	3 cut(s)	241, 280, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	131, 153, 196
BsuRI	GGCC	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
CfoI	GCGC	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	14, 101
CviAII	CATG	2 cut(s)	84, 405
CviQI	GTAC	2 cut(s)	14, 101
DpnI	GATC	3 cut(s)	243, 282, 297
DpnII	GATC	3 cut(s)	241, 280, 295
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco57I	CTGAAG	2 cut(s)	125, 375
FaeI	CATG	2 cut(s)	87, 408
FaiI	YATR	3 cut(s)	85, 353, 406
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FatI	CATG	2 cut(s)	83, 404
FbaI	TGATCA	2 cut(s)	241, 295
Fnu4HI	GCNGC	4 cut(s)	48, 142, 145, 210
Fsp4HI	GCNGC	4 cut(s)	48, 142, 145, 210
FspBI	CTAG	2 cut(s)	153, 288
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	4 cut(s)	48, 142, 145, 210
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	87, 408
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	193
HinfI	GANTC	2 cut(s)	118, 386
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	2 cut(s)	177, 297
Hpy188I	TCNGA	3 cut(s)	200, 226, 241
Hpy188III	TCNNGA	2 cut(s)	172, 311
Hpy99I	CGWCG	3 cut(s)	43, 166, 169
HpyAV	CCTTC	2 cut(s)	91, 100
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	87, 408
HspAI	GCGC	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	241, 295
Kzo9I	GATC	3 cut(s)	241, 280, 295
LpnPI	CCDG	6 cut(s)	37, 47, 198, 248, 332, 378
Lsp1109I	GCAGC	3 cut(s)	131, 153, 196
MaeI	CTAG	2 cut(s)	153, 288
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	3 cut(s)	243, 282, 297
MboI	GATC	3 cut(s)	241, 280, 295
MboII	GAAGA	2 cut(s)	346, 381
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	2 cut(s)	76, 321
MluNI	TGGCCA	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	4 cut(s)	28, 194, 294, 318
Mox20I	TGGCCA	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	153
NdeII	GATC	3 cut(s)	241, 280, 295
NlaIII	CATG	2 cut(s)	87, 408
NmuCI	GTSAC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PctI	GAATGC	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	4 cut(s)	49, 143, 146, 211
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PsrI	GAACNNNNNNTAC	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	144
RsaI	GTAC	2 cut(s)	15, 102
RsaNI	GTAC	2 cut(s)	14, 101
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	4 cut(s)	48, 142, 145, 210
Sau3AI	GATC	3 cut(s)	241, 280, 295
SchI	GAGTC	1 cut(s)	127
SetI	ASST	9 cut(s)	15, 102, 126, 146, 197, 211, 237, 310, 397
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	2 cut(s)	76, 321
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	2 cut(s)	153, 288
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	41
TaqII	GACCGA	1 cut(s)	157
TasI	AATT	2 cut(s)	76, 321
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	3 cut(s)	141, 144, 209
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	2 cut(s)	153, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.